Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamiella_20domercqiae_20[genbank_20GCA_5F001599275.1_202016- 03-01] 4 sequences; 8,470,812 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1 152 1e-31 seq2 84.2 5e-11 >seq1 Length=3734243 Score = 152 bits (168), Expect = 1e-31 Identities = 402/604 (67%), Gaps = 11/604 (2%) Strand=Plus/Minus Query 110544 GATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAAC-TGCTCTTATTTCTAAAAA 110602 |||||||| |||||||| ||||| ||| | || |||| ||| || || ||||| Sbjct 742279 GATGATTCAATTGAAGGGATTTACGATACG-TTGAAGACTTGTGCGCTCATCTCTAAGTC 742221 Query 110603 CTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAAC 110662 |||| || |||||| | | |||| | |||||| | | ||| || |||| || Sbjct 742220 TGCTGGGGGTATTGGTCTCAATATTCACAACATTCGCGCTACAGGCTCATATATTGCTGG 742161 Query 110663 AGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAA 110722 | | || ||| | | ||| || | || ||||| | || | ||| | || || Sbjct 742160 AACAAACGGTACCAGCAATGGTATTTTGCCCATGTTGCGTGTGTACAATAATACAGCTCG 742101 Query 110723 ATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTG 110779 ||| ||| ||||||| || |||| | || | || || || ||| | || || || Sbjct 742100 ATACGTGGATCAAGGCGGCAATAAGCGCCCGGGTGCTTTCGCAATTTATTTAGAGCCGTG 742041 Query 110780 GCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAG 110839 |||| || ||||||| || | || | || |||||||| ||| || || | Sbjct 742040 GCATGATGACGTATTTGAGTTTATTGATTTGCGGAAAAATCATGGAAAAGAGGAGATTCG 741981 Query 110840 AGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGA 110899 || || |||||||| ||| | |||||| ||||||| |||||||| || ||| |||| Sbjct 741980 TGCGCGAGATTTATTCCTTGCTCTATGGATTCCAGATTTGTTCATGAAGCGCGTTAAAGA 741921 Query 110900 AAATGGCATGTGGTCTCTTATGTGTCCTCATCG-TTCTCCTGGTCTATCTGATGTATATG 110958 |||| ||| ||||||||||||| | || | |||||||||| | || || |||| Sbjct 741920 GGATGGAGATTGGACTCTTATGTGTCC-AAGCGAATGTCCTGGTCTAGCCGACGTGTATG 741862 Query 110959 GAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCG-CAAACAA 111017 | | || || || || || ||| ||| || || || ||| || ||| | || | Sbjct 741861 GTGACGAATTCGAGGAGCTGTACACAAAGTACGAGAAGCTAGGTAAAGGTCGTCGTACCA 741802 Query 111018 ATTCCA-GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCC 111076 || | || ||| |||| |||| | ||| |||||| | ||| ||| || || | ||| Sbjct 741801 --TCAAGGCACAAAAACTGTGGTACGCAATTCTTGAAGCCCAAACTGAGACAGGTAATCC 741744 Query 111077 TTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAAT 111136 ||||| | || || ||| | ||||| || ||||| |||| ||| || || ||||| Sbjct 741743 GTATATGCTCTACAAGGATGCTGCCAATCGTAAGTCTAACCAAAAGAACTTGGGTACAAT 741684 Query 111137 TAAG 111140 ||| Sbjct 741683 CAAG 741680 Score = 116 bits (128), Expect = 9e-21 Identities = 303/450 (67%), Gaps = 23/450 (5%) Strand=Plus/Minus Query 113001 AACTCTCTACTGTTGGCACCAATGCCTACAGCTTCGACTGCACAGATTCTCGGTAATAAT 113060 ||||| || || ||||||||||||| || ||||| || | |||||| | || |||| Sbjct 741160 AACTCGCTTCTTGTGGCACCAATGCCCACTGCTTCCACCTCCCAGATTTTGGGCTTTAAT 741101 Query 113061 GAATGTTTCGAGCCAATTACAAGT--AATATTTATGTCCGACGTGTTCTAGCAGGTGAGT 113118 ||||| |||||||| ||||| || || |||||| || |||||| | |||||||||| Sbjct 741100 GAATGCTTCGAGCC--TTACACGTCAAACATTTATTCGCGTCGTGTTTTGGCAGGTGAGT 741043 Query 113119 TTGTACTTTGTAATAAATATCTGCAAGAAGAACTTCTCGGAATCGGTAAATGGAACAATG 113178 | | | || |||| ||| | || | ||| ||| || |||||| ||| Sbjct 741042 TCCAAGTCGTGAACCCATATTTGCTCAAGGATTTGGTCGAAATGGGATTGTGGAACGATG 740983 Query 113179 AAGTGAAAAACTCCATTATTGCTAATCAAGGTTCGGTTCAACATCTA------AAATTGC 113232 | |||| ||| || |||||| ||| || |||| |||| |||| | Sbjct 740982 ACATGAAGAACCGTATCGTTGCTAGCGGAGGATCAATTCA--GTCTATCCCGTCAATT-C 740926 Query 113233 CTGATTGCGTGAA--AGATGTATTTAAGACTATTTGGGAAATTAAGCAACGTGTCGTAAT 113290 ||||| |||| || |||| ||||| | ||||| |||| || | | || Sbjct 740925 CTGATGAACTGAAGCAGCTGTA--CAAGACAGTCTGGGAGATTAGCCAGAAAGCGATCAT 740868 Query 113291 TGATATGGCTGCAGATCGTGGCAAGTTTATCGATCAATCTCAGTCGATGAACTTATTTAT 113350 ||| ||||| |||||||||| | ||||||||||||||| || || | || ||| || Sbjct 740867 TGACATGGCCGCAGATCGTGCCGCGTTTATCGATCAATCCCAATCTCTCAATATATACAT 740808 Query 113351 GCCGGACACCT-CACCAGATAAGGTGA-CATC-TGCTCTATTTTACGGCTGGAAAAAAGG 113407 | | || ||| || | ||| ||| || | ||| | ||||| || ||| || || Sbjct 740807 G-CAGAGTCCTACAATGGGCAAGCTGACCAGCATGCAC--TTTTATGGTTGGTCTAAGGG 740751 Query 113408 TTTAAAAACAGGTATGTATTATTTGCGAAC 113437 | | ||||| ||||||||||| ||||| || Sbjct 740750 TCTCAAAACCGGTATGTATTACTTGCGCAC 740721 >seq2 Length=2224469 Score = 84.2 bits (92), Expect = 5e-11 Identities = 131/184 (71%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||| | | || ||||| || ||||||||| | || || || || || || ||| Sbjct 1892477 AGACATCTCATGGATGATGATCCTGTACTGTTCAATCGCCAGCCTTCGCTACACAAGATG 1892418 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAA--TGTAA 305423 ||||||||||||||| || || || | | | |||||| || |||| ||| | Sbjct 1892417 TCTATGATGGCTCATCGCGTAAAGGTTATGCCCTACTCGACATTCCGTCTAAACTTGTCA 1892358 Query 305424 GTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTC 305483 ||| || | || |||||||| ||||| ||||| ||||||||||| |||| || || | Sbjct 1892357 GTG-ACGT-CCCCATATAATGCCGATTTCGATGGTGATGAAATGAACTTGCACGTTCCAC 1892300 Query 305484 AATC 305487 | || Sbjct 1892299 AGTC 1892296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812739175844