Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamiella_20domercqiae_20[genbank_20GCA_5F001599275.1_202016- 03-01] 4 sequences; 8,470,812 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 174 2e-38 seq3 100 4e-16 >seq1 Length=3734243 Score = 174 bits (192), Expect = 2e-38 Identities = 563/864 (65%), Gaps = 15/864 (2%) Strand=Plus/Plus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCT-GTGTACTCTAA 111288 ||||| |||||||| ||||| ||||||||||| || || | || | | |||| | Sbjct 741597 GGAAGAGCGATTGAGGCCAAGTTGCAAACAGCAACTTCGTC-TGGGCTCGAGAACTCGAC 741655 Query 111289 AATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTT 111348 ||| || || | ||||||||||| || || ||||| |||||||||||| ||| Sbjct 741656 AATCTCGCAGCAAAGATTGGAACTCTTGATTGTACCCAAGTTCTTTTGGTTAGACTTACG 741715 Query 111349 GTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAAT 111408 ||| ||||||||||||||||| || || | || ||||| || || | || ||||| Sbjct 741716 ATTGGCAGCATCCTTGTAGAGCATATACGGATTACCTGTCTCAGTTTGGGCTTCAAGAAT 741775 Query 111409 AGCCTTCCA-AACATCGGCGGCTGGTACAATGG--CGTTGGCCCGTCCCT-CCGCCTCGT 111464 || | ||| | | | | || | |||| || | || | ||| | ||||| Sbjct 741776 TGCGTACCACAGTTTTTGTGCCTTG----ATGGTACGACGACCTTTACCTAGCTTCTCGT 741831 Query 111465 ACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGT 111524 |||||||||| || | || || || ||||| | |||||| ||||| || | | Sbjct 741832 ACTTTGTGTACAGCTCCTCGAATTCGTCACCATACACGTCGGCTAGACCAGGACATTCGC 741891 Query 111525 CTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAA 111584 |||||| | ||||| ||| | ||| | || | ||| ||||||||||| | ||||||| Sbjct 741892 TTGGACACATAAGAGTCCAATCTCCATCCTCTTTAACGCGCTTCATGAACAAATCTGGAA 741951 Query 111585 TCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTA 111644 |||| || | || | ||||| ||| ||| || | || || || || | Sbjct 741952 TCCATAGAGCAAGGAATAAATCTCGCGCACGAATCTCCTCTTTTCCATGATTTTTCCGCA 742011 Query 111645 ACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCT 111704 | |||| ||||| | | || | ||||| ||||| | ||| | ||||| || ||| Sbjct 742012 AATCAATAAACTCAAATACGTCATCATGCCACGGCTCTAAATAAATTGCGAAAGCACCCG 742071 Query 111705 TTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTG 111761 || | || |||||| || || || ||||| || | || || | ||| | Sbjct 742072 GGCGCTTATTGCCGCCTTGATCCACGTATCGAGCTGTATTATTGTACACACGCAACATGG 742131 Query 111762 GAATAATACCATCTGATTG-ACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACA 111820 | | |||||||| || | | ||| ||||| || |||| || | || | | Sbjct 742132 GCAAAATACCAT-TGCTGGTACCGTTTGTTCCAGCAATATATGAGCCTGTAGCGCGAATG 742190 Query 111821 TCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGA 111880 | || || | | |||||||||||||| |||| ||||| ||||||| | | | Sbjct 742191 TTGTGAATATTGAGACCAATACCCCCAGCAGACTTAGAGATGAGCGCACAAGTCTTCAAC 742250 Query 111881 GTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATC 111940 || | || || || | ||||| || |||| | | | ||| || ||||||| Sbjct 742251 GTATCGTAAATCCCTTCAATTGAATCATCCTGCATTTGAACCAAGAAACATGAGGACATC 742310 Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 |||| || ||||||||||| | | ||| || | ||||| ||||||| ||| Sbjct 742311 TGCGCCTGAGGCGTACCAGCATTATACAAGGTAGGGCTGGCGTGCGTGAACATCTTCTGG 742370 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 ||| || || |||||||| || | ||||| ||||| ||||| || || | Sbjct 742371 CTCATAAGTTCATAAGTCTCCAAAACTCGAGGGATGTCATCCCCATGGATTCCAATAGAT 742430 Query 112061 ACCCGCATGAACATGTACTGTGGG 112084 || ||||| | ||||| ||||||| Sbjct 742431 ACACGCATAATCATGTGCTGTGGG 742454 >seq3 Length=2099697 Score = 100 bits (110), Expect = 4e-16 Identities = 385/587 (66%), Gaps = 32/587 (5%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 |||||| ||| ||||||||||||||||||||||| || |||| || || ||||| Sbjct 1028229 TAGTCCGAGACTCGCTTCTCAAAGAAGTTGGTCTTACCCGCAAGCGAGATATTCTCCATG 1028170 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA---TGGG-TGGCACCCCAACTTGTTTGAGGAG 122486 || ||||| || ||| || | | | |||| |||| ||| ||| | Sbjct 1028169 AAATCAAAGGGGTTCGCAACGCTGTACACCTTGGGATGGC----CAAGAGCCACGAGCAA 1028114 Query 122487 ACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG-GT 122545 || || | || |||||||||||| | |||| || | ||||| || | || | Sbjct 1028113 GCGGTCGGCAACGAACTCAATGTACTGGCACATGAGCTTTGCATTCATGCCCAAAAGAGA 1028054 Query 122546 TACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 122605 ||| ||||| || || || ||| | ||||| |||||||||||||| | | || Sbjct 1028053 TACG-GGGAGCGCATCAGTGAGGAATTCCTTCTCGATCTCAACCGCCTCAGTGATAATCC 1027995 Query 122606 CGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGT-CTTGAAGA-GCTCCACGGCAAA 122663 | ||| | || | || | || ||| || | |||| | | || | |||| Sbjct 1027994 GCTCGATGATCTCACGCGACGGGCGGTTTT-CAAGGTGCGTGAACAAGAGGCAAG-CAAA 1027937 Query 122664 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCAT 122723 || || | ||| ||||| || ||||| || ||||| || || ||||| ||||| Sbjct 1027936 ATCAGTATGCATACCTTCATCGCGAGAAATTAGCTCATTAGAAAATGTAAGACCAGGCAT 1027877 Query 122724 GAGACCCCGCTTCTTCAACCAATAAATAGC--GCAGAATGACCCGGAGAAGAAGATACCC 122781 ||| || |||||||| | ||| | || || || ||| || || ||||||||||| ||| Sbjct 1027876 GAGGCCGCGCTTCTTTAGCCAGAAGAT-GCTTGC-GAAAGAGCCTGAGAAGAAGATCCCC 1027819 Query 122782 TCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCA---AAC 122838 || ||| |||||||| | |||||| || || || | | |||| |||| | | Sbjct 1027818 TCAACAGCAGCAAACGCCACAAGGCGCTCTGCAAATGTG---GACTCGCGATCACTGATC 1027762 Query 122839 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAAT 122898 || || ||||| || ||||| || |||| || || | || | ||||| | || Sbjct 1027761 CAGCGCAACGCCCACTTAGCCTTTTTAGCAATGCAGGGAATGGTCTCAATGGCATTGAAC 1027702 Query 122899 AACTGCT---TCT-TTTCAGATCCATCCTTAATGTATTTGTCAATCA 122941 | |||| || |||| | ||||||||| ||| ||||||||| Sbjct 1027701 AGGTGCTGTGCCTCTTTCGG----ATCCTTAATATATGTGTCAATCA 1027659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031968598400