Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamiella_20domercqiae_20[genbank_20GCA_5F001599275.1_202016- 03-01] 4 sequences; 8,470,812 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2 150 2e-31 seq3 120 3e-22 >seq2 Length=2224469 Score = 150 bits (166), Expect = 2e-31 Identities = 172/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || |||||||| || |||||||| ||||| || ||||||||| || | Sbjct 961341 ATGCAGATTTTCGTGAAGACGCTAACGGGCAAGACCATTACGCTCGAGGTTGAG--AGTT 961398 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 |||| ||||| | | ||| || ||| || |||||||| || || || |||| Sbjct 961399 CGGATACCATTGACGCTGTCAAGAGCAAGATTGCCGATAAGGAGGGCATCCCCCCTGACC 961458 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 |||||||||| || |||||||| ||||| || ||||||| |||||||| | ||||| | Sbjct 961459 AGCAGCGTCTTATCTTTGCTGGCAAGCAGCTAGAGGATGGACGTACCCTCTCGGACTACA 961518 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | |||||||| || ||||| || || || | || || || ||||| Sbjct 961519 ATATTCAAAAGGAGTCGACTCTACACCTTGTGCTTCGCCTCCGTGGTGG 961567 >seq3 Length=2099697 Score = 120 bits (132), Expect = 3e-22 Identities = 364/560 (65%), Gaps = 12/560 (2%) Strand=Plus/Plus Query 64297 TTCCCAATTAGGTACCCTGATTTGTGGGAGCTTTACAAGAAAGCCATCGCAAGTTTCTGG 64356 || || || ||||||| ||| | ||| || || |||||||| || ||||||| Sbjct 1027367 TTTCCTATCAGGTACCATGAAATTTGGCAGGCGTATAAGAAAGCGGAGGCCTCTTTCTGG 1027426 Query 64357 ACGGTCGAGGAGGTTGATCTCGCCAAGGATCTCAGCGACTGGGAAAACC---TAAACTCA 64413 || | ||| ||| ||||||||| |||||| | | |||||||| || | | ||| Sbjct 1027427 ACTGCCGAAGAGATTGATCTCGGTAAGGATTTGAATGACTGGGACAATCGCATGAACA-- 1027484 Query 64414 CAGGAACAGCACTTCATCAAGTTG---GTCCTAGCATTCTTCGCATCAAGTGACGGAATT 64470 |||| ||| ||| ||| | | || || ||||| |||||| | ||||| ||| Sbjct 1027485 -AGGATGAGCGATTCTTCATTTCGAATGTACTCGCATTTTTCGCAGCCTCCGACGGCATT 1027543 Query 64471 GTGTTTGAGAATTTGGACCTAAATTTTACAAAGGATGTTCAGATCCCAGAGGCGCGGTCA 64530 || ||||| ||| || | || || || ||||| ||||| || Sbjct 1027544 GTCAACGAGAACCTGGTTGAGCGGTTCTCTGGTGAAGTGCAAATCCCTGAGGCAAAGTGT 1027603 Query 64531 TTCTATGCGTATCAGGGATTTAACGAAAGTATTCATGGCGAGACGTATTCGCTCATGATT 64590 || |||| | || | | || | |||||| ||||| || || ||| ||||| Sbjct 1027604 TTTTATGGATTCCAAATCATGATGGAGAATATTCACTCGGAGACTTACTCACTCCTGATT 1027663 Query 64591 GACAAGTTTGTTCGGGATCCTGTCGAGAAGGATGGACTGTTCAGGGCTATAGAGACTGTA 64650 |||| | | || |||||| ||| | ||||||| || || ||||| | Sbjct 1027664 GACACATATATTAAGGATCCGAAAGAGGCACAGCACCTGTTCAATGCCATTGAGACCATT 1027723 Query 64651 CCCGCTGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGATGA---ATCGTGGGTCGTCG 64707 ||| || ||||||||||| | ||||| | || ||||| | |||| | ||| | Sbjct 1027724 CCCTGCATTGCTAAAAAGGCTAAGTGGGCGTTGCGCTGGATCAGTGATCGCGAGTCCACA 1027783 Query 64708 TTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTC 64767 |||| |||| || | || ||||| ||| || || || ||||| || || || ||| Sbjct 1027784 TTTGCAGAGCGCCTTGTGGCGTTTGCTGCTGTTGAGGGGATCTTCTTCTCAGGCTCTTTC 1027843 Query 64768 TGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAG 64827 || ||||||||||| ||||| ||||| ||||| ||||| | ||||| || ||| Sbjct 1027844 GCAAGCATCTTCTGGCTAAAGAAGCGCGGCCTCATGCCTGGTCTTACATTTTCTAATGAG 1027903 Query 64828 CTGATCTCTCGGGACGAGGG 64847 || || ||||| || || || Sbjct 1027904 CTAATTTCTCGCGATGAAGG 1027923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310371484480