Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamiella_20domercqiae_20[genbank_20GCA_5F001599275.1_202016- 03-01] 4 sequences; 8,470,812 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1 210 3e-49 seq3 136 5e-27 >seq1 Length=3734243 Score = 210 bits (232), Expect = 3e-49 Identities = 1035/1632 (63%), Gaps = 39/1632 (2%) Strand=Plus/Plus Query 76770 TTCTT-ATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACAT 76828 ||||| ||| | || ||||| ||||| | || || | | || || | || ||||| Sbjct 740678 TTCTTGATCAACAGTGAACTGGATTGGCGCGGAAGCTGCCTGAGTGCGCAAGTAATACAT 740737 Query 76829 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACT 76888 ||| ||||| |||||| | ||| || || || |||||||| ||||| ||| | Sbjct 740738 ACCGGTTTTGAGACCCTTAGACCAACCATAAAAGTGCATGCTGGTCAGCTTGCCCATTGT 740797 Query 76889 AGGA-TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAG 76947 |||| || || || | ||||| | || || ||||||||| || || | | ||| | Sbjct 740798 AGGACTCTGC-ATGTATATATTGAGAGATTGGGATTGATCGATAAACGCGGCACGATCTG 740856 Query 76948 CCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGA 77007 | ||||| | || || | || || ||| ||||| | || ||| | | || || | Sbjct 740857 CGGCCATGTCAATGATCGCTTTCTGGCTAATCTCCCAGACTGTCTTGTACAGCTGCTTCA 740916 Query 77008 TATCATCTGGAAGGTTTG------TATTTTGAATGGAACCACCATCTGATATAATTGTAT 77061 ||||| |||| ||| || ||||| || || || | | || | Sbjct 740917 GTTCATCAGGAA---TTGACGGGATAGACTGAATTGATCCTCCGCTAGCAACGATACGGT 740973 Query 77062 TCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAA 77121 |||| || ||||| ||||||||| | | || ||| | | || | || || || | Sbjct 740974 TCTTCATGTCATCGTTCCACAATCCCATTTCGACCAAATCCTTGAGCAAATATGGGTTCA 741033 Query 77122 CTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCA 77181 | | ||| || || || | ||| || | ||| | ||||| || || || || || | Sbjct 741034 CGACTTGGAACTCACCTGCCAAAACACGACGCGAATAAATGTTTGACGTGTAAGGCTCGA 741093 Query 77182 CAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATA 77241 ||||||| |||||||| || | || |||||||| ||||| |||||||| || | Sbjct 741094 AGCATTCATTAAAGCCCAAAATCTGGGAGGTGGAAGCAGTGGGCATTGGTGCCAC-AAGA 741152 Query 77242 AACTATTTCTGAGACCATGTGTTCTGATTTTATCT--TTTAGATATTTCCAATCCCAAAG 77299 | | | || | ||| || || | | | || || | |||||||||||| Sbjct 741153 AGCGAGTTGCGCAACCCA-TGCTCAGCCATCGACGACTTGAGGGTGTCCCAATCCCAAAG 741211 Query 77300 ATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCC 77359 ||||||||| |||| |||| || || | || || || | |||| ||||| Sbjct 741212 ATCTGAAGGGGTAACACCCCAGAGGTCAAACTGCAGCTGGCCCTCTGAAGCAGGCGATCC 741271 Query 77360 ATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCC 77419 | ||| | ||||| | || ||| | ||||||| || || ||||| | || | Sbjct 741272 AGGATAAGACTCATAGTGACCATCTCTAGCAGCTAGCTCTACGCTAGCTTCAATAGCGGC 741331 Query 77420 GTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGG 77479 || || ||||| || || || | ||||||| || | || ||| ||||| ||||| Sbjct 741332 GTGGTATATTGTCTCAAATATTTGAATATTGAGCTCGCGCGCCTCAGGGCTATCGAACGG 741391 Query 77480 ATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATG 77539 || ||| | || || | || || || || || || |||| | ||||||| | ||| Sbjct 741392 CAAACGTAGAGCAAAGAATGTGTCGGCCAAACCTTGGACACCAAGAGCAATAGGGCGATG 741451 Query 77540 TCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATT 77599 | | | || || ||| || |||| ||| || || || | || ||||| || Sbjct 741452 GCGCATGTTTGAGCGACGAGCCTCAGGAACAGGGTAGTAGTTCTTCTCAATAATGCAGTT 741511 Query 77600 GAGATTTCTAACAACTACTTTAACCACGTC------CTTT----AGTTTAAGAAAA-TCA 77648 ||| || | ||| | || ||| |||| || |||| |||| ||| | || Sbjct 741512 GAGGTTCCGAACTAGAACCTTAGCCACATCATGGAGCTTTGCGAAGTTATAGAGTACTCC 741571 Query 77649 A--ATCTTCCATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTA 77706 | ||| | || | | | || | ||| || || || | || ||||| || | Sbjct 741572 ACCATCGCGCTGCTCGAGGTAGC-TGGGAAGAGCGATTGAGGCCAAGTTGCAAACAGCAA 741630 Query 77707 CCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGC 77766 | || | | | | | | | | |||||| || ||||| || ||||| || | Sbjct 741631 CTTCGTCTGGGCTCGAGAACTCGACAATCTCGCAGCAAAGATTGGAACTCTTGATTGTAC 741690 Query 77767 CCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCC 77826 ||| || | |||||| ||| |||| | ||||| || || ||| ||||| | | Sbjct 741691 CCAAGTTCTTTTGGTTAGACTTACGATTGGCAGCATCCTTGTAGAGCATATACGGATTAC 741750 Query 77827 CGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATA---- 77882 | || ||| | || | ||| | ||| | | ||| | | || || || || Sbjct 741751 CTGTCTCAGTTTGGGCTTCAAGAATTGCGTACCACAGTTTTTGTGCCTTGATGGTACGAC 741810 Query 77883 GATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAA 77942 || | || ||| || | || || | || || ||| || ||||| || || | Sbjct 741811 GACCTTTA---CCTAGCT-TCTCGTACTTTGTGTACAGCTCCTCGAATTCGTCACCATAC 741866 Query 77943 ACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTA 78002 || || | | ||||| ||||| |||| ||||| | | ||| || ||||| || ||| Sbjct 741867 ACGTCGGCTAGACCAGGACATTCGCTTGGACACATAAGAGTCCAATCTCCATCCTCTTTA 741926 Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 || || ||||| || | ||| || ||||||||||||| |||| |||||| | | | Sbjct 741927 ACGCGCTTCATGAACAAATCTGGAATCCATAGAGCAAGGAATAAATCTCGCGCACGAATC 741986 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 || || ||||| ||| || | ||| | |||||| | | ||| |||||| || Sbjct 741987 TCCTCTTTTCCATGATTTTTCCGCAAATCAATAAACTCAAATACGTCATCATGCCACGGC 742046 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCG 78182 |||| ||| ||||| | | | || || || ||||| || || ||||| | |||| || Sbjct 742047 TCTAAATAAATTGCGAAAGCACCCGGGCGCTTATTGCCGCCTTGATCCACGTATCGAGCT 742106 Query 78183 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAA 78242 || ||||| || || | |||||| || | |||||| || || || |||||||||| | Sbjct 742107 GTATTATTGTACACACGCAACATGGGCAAAATACCATTGCTGGTACCGTTTGTTCCAGCA 742166 Query 78243 ATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTA 78302 ||||| || | |||||||| || ||| | || || || || || |||| Sbjct 742167 ATATATGAGCCTGTAGCGCGAATGTTGTGAATATTGAGACCAATACCCCCAGCAGACTTA 742226 Query 78303 GATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATG 78362 || || || || ||| ||||| |||||||| || || || || |||||| ||| Sbjct 742227 GAGATGAGCGCACAAGTCTTCAACGTATCGTAAATCCCTTCAATTGAATCATCCTGCATT 742286 Query 78363 TTAA-GAAGAAA 78373 | || |||||| Sbjct 742287 TGAACCAAGAAA 742298 >seq3 Length=2099697 Score = 136 bits (150), Expect = 5e-27 Identities = 383/587 (65%), Gaps = 6/587 (1%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || ||||||||| ||| | ||||||||| | | ||||| || ||||||||||| ||| Sbjct 1027944 CAAGCAAAATCAGTATGCATACCTTCATCGCGAGAAATTAGCTCATTAGAAAATGTAAGA 1027885 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 || ||||| || || || || || ||||| || || |||||||| || || ||||| Sbjct 1027884 CCAGGCATGAGGCCGCGCTTCTTTAGCCAGAAGATGCTTGCGAAAGAGCCTGAGAAGAAG 1027825 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCG---TTGTGT 48317 || || || || || ||||| || ||| | |||| | | ||| ||| | Sbjct 1027824 ATCCCCTCAACAGCAGCAAACGCCACAAGGCGCTCTGCAAATGTGGACTCGCGATCACTG 1027765 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 ||||| || ||||| | |||||| || | || || || || || || ||||| Sbjct 1027764 ATCCAGCGCAACGCCCACTTAGCCTTTTTAGCAATGCAGGGAATGGTCTCAATGGCATTG 1027705 Query 48378 AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 || || | | || || ||| |||| || || || || | || || | Sbjct 1027704 AACAGGTGCTGTGCCTCTTTCGGATCCTTAATATATGTGTCAATCAGGAGTGAGTAAGTC 1027645 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 || ||||||||||| || || || || ||||| |||||||| | || || | ||| Sbjct 1027644 TCCGAGTGAATATTCTCCATCATGATTTGGAATCCATAAAAACACTTTGCCTCAGGGATT 1027585 Query 48498 TGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCA 48557 || || || | | || || ||| ||| ||||| || || || || || || || Sbjct 1027584 TGCACTTCACCAGAGAACCGCTCAACCAGGTTCTCGTTGACAATGCCGTCGGAGGCTGCG 1027525 Query 48558 AAAAATGCTAATACATGTTTAATAAAATAT---TTTTCGTTGGAAGTCAGTTTATTCCAG 48614 |||||||| | ||||| ||| || || | || ||| | | || | |||| Sbjct 1027524 AAAAATGCGAGTACATTCGAAATGAAGAATCGCTCATCCTTGTTCATGCGATTGTCCCAG 1027465 Query 48615 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTT 48674 ||||| | ||| || | ||| | ||||| || ||||| || || ||||| ||||| Sbjct 1027464 TCATTCAAATCCTTACCGAGATCAATCTCTTCGGCAGTCCAGAAAGAGGCCTCCGCTTTC 1027405 Query 48675 TTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 |||||| | ||| || ||| ||| ||| || || | ||||| Sbjct 1027404 TTATACGCCTGCCAAATTTCATGGTACCTGATAGGAAATAGTACAAA 1027358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668765266560