Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamiella_20domercqiae_20[genbank_20GCA_5F001599275.1_202016- 03-01] 4 sequences; 8,470,812 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1 203 5e-47 seq3 165 1e-35 >seq1 Length=3734243 Score = 203 bits (224), Expect = 5e-47 Identities = 1070/1694 (63%), Gaps = 36/1694 (2%) Strand=Plus/Plus Query 75365 TTCTTATCCAAC-GTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACAT 75423 ||||| |||| |||||||| || || | ||| |||| | || || | || ||||| Sbjct 740678 TTCTTGATCAACAGTGAACTGGATTGGCGCGGAAGCTGCCTGAGTGCGCAAGTAATACAT 740737 Query 75424 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACT 75483 ||| ||||| |||||| | ||| || || || |||||||| || || ||| | Sbjct 740738 ACCGGTTTTGAGACCCTTAGACCAACCATAAAAGTGCATGCTGGTCAGCTTGCCCATTGT 740797 Query 75484 CGGA-TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAG 75542 ||| || || || | ||||| | || || ||||||||| || || | | ||| | Sbjct 740798 AGGACTCTGC-ATGTATATATTGAGAGATTGGGATTGATCGATAAACGCGGCACGATCTG 740856 Query 75543 CCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGA 75602 | ||||| | || || | || || ||| ||||| | || ||| | | || || | Sbjct 740857 CGGCCATGTCAATGATCGCTTTCTGGCTAATCTCCCAGACTGTCTTGTACAGCTGCTTCA 740916 Query 75603 TATCATCTGGAA--GATTTG-TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCT 75659 ||||| |||| || | || ||||| ||||| || || | || |||| Sbjct 740917 GTTCATCAGGAATTGACGGGATAGACTGAATTGATCCTCCGCTAGCAACGATACGGTTCT 740976 Query 75660 TGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAA 75719 | || ||||| ||||||||| | ||| ||| | | || | || || || || | Sbjct 740977 TCATGTCATCGTTCCACAATCCCATTTCGACCAAATCCTTGAGCAAATATGGGTTCACGA 741036 Query 75720 TTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAG 75779 ||| || || || | ||| || | || | ||||| || || || || || | Sbjct 741037 CTTGGAACTCACCTGCCAAAACACGACGCGAATAAATGTTTGACGTGTAAGGCTCGAAGC 741096 Query 75780 ATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAAC 75839 ||||||| |||||||| || | || |||||||| ||||| |||||||| || || | Sbjct 741097 ATTCATTAAAGCCCAAAATCTGGGAGGTGGAAGCAGTGGGCATTGGTGCCAC-AAGAAGC 741155 Query 75840 TATTTCTGAGACCATGTGTTCTGATTTTATCT--TTTAGATATTTCCAATCCCAAAGATC 75897 | || | ||| || || | | | || || | ||||||||||||||| Sbjct 741156 GAGTTGCGCAACCCA-TGCTCAGCCATCGACGACTTGAGGGTGTCCCAATCCCAAAGATC 741214 Query 75898 TGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATT 75957 ||| || |||| ||||||| || | || || || | |||| |||||| Sbjct 741215 TGAAGGGGTAACACCCCAGAGGTCAAACTGCAGCTGGCCCTCTGAAGCAGGCGATCCAGG 741274 Query 75958 ATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTA 76017 ||| | || || || || | ||||||| || || || || | || ||| Sbjct 741275 ATAAGACTCATAGTGACCATCTCTAGCAGCTAGCTCTACGCTAGCTTCAATAGCGGCGTG 741334 Query 76018 ATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATA 76077 || ||||| || || || | |||| || || |||| ||| | ||||| || || | Sbjct 741335 GTATATTGTCTCAAATATTTGAATATTGAGCTCGCGCGCCTCAGGGCTATCGAACGGCAA 741394 Query 76078 ATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCT 76137 | ||| | || |||| || || | || || || |||| | ||||||| | ||| | Sbjct 741395 ACGTAGAGCAAAGAATGTGTCGGCCAAACCTTGGACACCAAGAGCAATAGGGCGATGGCG 741454 Query 76138 CTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAG 76197 | | || || ||| || |||| |||||| || || | || ||||| ||||| Sbjct 741455 CATGTTTGAGCGACGAGCCTCAGGAACAGGGTAGTAGTTCTTCTCAATAATGCAGTTGAG 741514 Query 76198 ATTTCTGACAACTACTTTAACCACGTCCTTTAG-TTTGAGAAA--ATCAAATTTTCCATC 76254 || | || | || ||| |||| || | || |||| ||| || | | |||| | Sbjct 741515 GTTCCGAACTAGAACCTTAGCCACATCATGGAGCTTTGCGAAGTTATAGAGTACTCCACC 741574 Query 76255 TATCACAA----------ACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCT 76304 ||| | | | |||||| || || || | || ||||| || || | Sbjct 741575 -ATCGCGCTGCTCGAGGTAGCTGGGAAGAGCGATTGAGGCCAAGTTGCAAACAGCAACTT 741633 Query 76305 CATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAA 76364 | | | | | | | | ||||| ||| ||||| || |||||| || || | Sbjct 741634 CGTCTGGGCTCGAGAACTCGACAATCTCGCAGCAAAGATTGGAACTCTTGATTGTACCCA 741693 Query 76365 GATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAG 76424 || | |||||| ||| || | ||||| || || | | ||||| | || | Sbjct 741694 AGTTCTTTTGGTTAGACTTACGATTGGCAGCATCCTTGTAGAGCATATACGGATTACCTG 741753 Query 76425 TTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATA----GAT 76480 | ||| | || | ||| | ||| | | ||| | | || || || || || Sbjct 741754 TCTCAGTTTGGGCTTCAAGAATTGCGTACCACAGTTTTTGTGCCTTGATGGTACGACGAC 741813 Query 76481 TTGTATC--GCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAA 76538 | || | ||||||| | ||||||| | || || ||||| || || | | Sbjct 741814 CTTTACCTAGCTTCTCGTACT----TTGTGTACAGCTCC--TCGAATTCGTCACCATACA 741867 Query 76539 CATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAA 76598 | || | | |||||||||||| | |||||||| | | ||| || ||||| || |||| Sbjct 741868 CGTCGGCTAGACCAGGACATTCGCTTGGACACATAAGAGTCCAATCTCCATCCTCTTTAA 741927 Query 76599 CCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTT 76658 | || ||||| || | ||| || ||||||||||||| |||| |||||| | | | | Sbjct 741928 CGCGCTTCATGAACAAATCTGGAATCCATAGAGCAAGGAATAAATCTCGCGCACGAATCT 741987 Query 76659 CTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTT 76718 | || ||||| ||| || | ||| | ||||| | | ||| |||||| || | Sbjct 741988 CCTCTTTTCCATGATTTTTCCGCAAATCAATAAACTCAAATACGTCATCATGCCACGGCT 742047 Query 76719 CTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAG 76778 ||| ||| || || | | ||||||| || ||||| || || ||||| | |||| || | Sbjct 742048 CTAAATAAATTGCGAAAGCACCCGGGCGCTTATTGCCGCCTTGATCCACGTATCGAGCTG 742107 Query 76779 TGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAA 76838 | ||||| || || | |||||| || | ||| || || ||||| |||||||||| || Sbjct 742108 TATTATTGTACACACGCAACATGGGCAAAATACCATTGCTGGTACCGTTTGTTCCAGCAA 742167 Query 76839 TATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAG 76898 |||| || || ||||| || |||| || || || || || || |||| Sbjct 742168 TATATGAGCCTGTAGCGCGAATGTTGTGAATATTGAGACCAATACCCCCAGCAGACTTAG 742227 Query 76899 AGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGT 76958 |||| || ||||| ||||| || || || || || || || ||||||| ||| | Sbjct 742228 AGATGAGCGCACAAGTCTTCAACGTATCGTAAATCCCTTCAATTGAATCATCCTGCATTT 742287 Query 76959 TAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAG 77018 || | ||||| ||||| || ||| || || |||||| |||| ||||| Sbjct 742288 GAACCAAGAAACATGAGGACATCTGCGCCTGAGGCGTACCAGCATTATACAAGGTAGGGC 742347 Query 77019 ATGCATGAGTGAAC 77032 || || |||||| Sbjct 742348 TGGCGTGCGTGAAC 742361 >seq3 Length=2099697 Score = 165 bits (182), Expect = 1e-35 Identities = 392/590 (66%), Gaps = 12/590 (2%) Strand=Plus/Minus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || ||||||||| ||| | |||||||| | | ||||| || ||||||||||| || Sbjct 1027944 CAAGCAAAATCAGTATGCATACCTTCATCGCGAGAAATTAGCTCATTAGAAAATGTAAGA 1027885 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 |||||||| || || ||||| || ||||| || || |||||||| || || ||||| Sbjct 1027884 CCAGGCATGAGGCCGCGCTTCTTTAGCCAGAAGATGCTTGCGAAAGAGCCTGAGAAGAAG 1027825 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATC---ATTATGA 46806 || || || ||||| || || || ||||| | |||| | | ||| || || | Sbjct 1027824 ATCCCCTCAACAGCAGCAAACGCCACAAGGCGCTCTGCAAATGTGGACTCGCGATCACTG 1027765 Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 ||||| | ||||| | ||||||||| | || || || || || || ||||| Sbjct 1027764 ATCCAGCGCAACGCCCACTTAGCCTTTTTAGCAATGCAGGGAATGGTCTCAATGGCATTG 1027705 Query 46867 AAGAGAAAGtttttttCATCACT---ATCTTTAACATATGTATCTATTAAAAGACTATAC 46923 || || || | | | || | ||| |||| |||||| || || | || || Sbjct 1027704 AACAG---GTGCTGTGCCTCTTTCGGATCCTTAATATATGTGTCAATCAGGAGTGAGTAA 1027648 Query 46924 ATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTA 46983 | || || ||||| || || || || || ||||| |||||||| |||| |||| Sbjct 1027647 GTCTCCGAGTGAATATTCTCCATCATGATTTGGAATCCATAAAAACACTTTGCCTCAGGG 1027588 Query 46984 ATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCA 47043 || || || || | | || || ||| || ||||| || || || || || || Sbjct 1027587 ATTTGCACTTCACCAGAGAACCGCTCAACCAGGTTCTCGTTGACAATGCCGTCGGAGGCT 1027528 Query 47044 GCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCA---GTTTATTC 47100 || |||||||| | ||||| ||| || || ||||| | ||| | || | | Sbjct 1027527 GCGAAAAATGCGAGTACATTCGAAATGAAGAATCGCTCATCCTTGTTCATGCGATTGTCC 1027468 Query 47101 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCT 47160 |||||||| | ||| || | ||| | ||||| || |||||||| || ||||| ||| Sbjct 1027467 CAGTCATTCAAATCCTTACCGAGATCAATCTCTTCGGCAGTCCAGAAAGAGGCCTCCGCT 1027408 Query 47161 TTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAA 47210 || |||||| | ||| || ||| | || ||| ||||| | ||||| Sbjct 1027407 TTCTTATACGCCTGCCAAATTTCATGGTACCTGATAGGAAATAGTACAAA 1027358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934364353280