Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamomyces_20ciferrii_20[genbank_20GCA_5F000313485.1_202012-09- 21] 364 sequences; 15,901,152 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq326 132 5e-26 seq275 118 1e-21 seq292 113 5e-20 >seq326 Length=266662 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | ||| || ||||| | ||| ||||||||||| || |||||||| Sbjct 240016 CCACCTCTCAATCTCAAGACCAAATGTAATGTTGATTCTTTTTGGATATTGTAATCAGAT 240075 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||| | ||||||||||||| | |||| |||||| ||||| || || Sbjct 240076 AAGGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCAGGTGGA 240135 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||||||| ||| | | || | ||||| | | ||| ||| Sbjct 240136 ATACCTTCCTTGTCTTGAATTTTTGATTTAACATTGTCAATAGTGTCTGAAGATTCAACT 240195 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | || || || ||||| ||||| ||||| ||||||||| Sbjct 240196 TCTAAAGTGATAGTTTTACCAGTCAAAGTTTTGACGAAAATTTGCATA 240243 Score = 125 bits (138), Expect = 7e-24 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | || || ||||| | ||| ||||||||||| |||||||| || | Sbjct 239788 CCACCTCTTAATCTTAAGACCAAATGTAATGTTGATTCTTTTTGAATGTTGTAGTC--TG 239845 Query 143018 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || | ||| ||||| | |||||||||||| | |||| |||||| ||||| || | Sbjct 239846 ATAAAGTACGACCATCTTCTAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCAGGTG 239905 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || ||||||||||| |||||| ||| | | || | ||||| | | ||| | Sbjct 239906 GAATACCTTCTTTGTCTTGAATTTTGGATTTAACGTTATCGATGGTGTCTGATGATTCAA 239965 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| | ||| | ||||| || ||||| ||||| ||||| ||||||||| Sbjct 239966 CTTCTAAAGTAATGGTCTTACCAGTCAAAGTTTTAACGAAAATTTGCATA 240015 Score = 109 bits (120), Expect = 6e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCT 143032 ||||| ||||| | ||| ||||||||||| |||||||| || | || || |||| Sbjct 239575 AAAACCAAATGTAATGTTGATTCTTTTTGAATGTTGTAGTCTGATAAGGTTCTACCGTCT 239634 Query 143033 TCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 143092 || | |||||||||||| | || | |||||| ||||| || || || |||||||| || Sbjct 239635 TCTAATTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGTGGAATACCTTCTTTATCT 239694 Query 143093 GTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTC 143152 |||||| ||| | | || | || || | | ||| ||||| | ||| | || Sbjct 239695 TGGATTTTTGATTTGACGTTATCAATAGTATCGGAAGATTCAACTTCTAAAGTAATAGTT 239754 Query 143153 TTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || || || ||||| ||||| ||||||||| Sbjct 239755 TTACCTGTTAAGGTTTTAACGAAAATTTGCATA 239787 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | | || ||||| | ||| ||||||||||| || |||||||| Sbjct 239332 CCACCTCTTAATCTAAGGACCAAATGCAATGTTGATTCTTTTTGAATATTGTAATCAGAT 239391 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | |||||||||||| | || | |||||| || || || || Sbjct 239392 AAGGTTCTACCATCTTCTAATTGTTTACCAGCGAAAATTAAACGTTGTTGGTCAGGTGGA 239451 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || |||||| ||| | | || | || || | | ||| ||| Sbjct 239452 ATACCTTCTTTATCTTGGATTTTTGATTTAACATTGTCAATAGTATCTGAAGATTCAACT 239511 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | || || || ||||| || || || || ||||||||| Sbjct 239512 TCTAAAGTGATAGTTTTACCAGTCAAAGTCTTAACAAAGATTTGCATA 239559 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/136 (75%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | || || ||||| | ||| ||||||||||| |||||||| || | Sbjct 240244 CCACCTCTTAATCTTAAGACCAAATGTAATGTTGATTCTTTTTGAATGTTGTAGTC--TG 240301 Query 143018 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || | ||| ||||| | ||||||||||||| | |||| |||||| ||||| || | Sbjct 240302 ATAAAGTACGACCATCTTCTAATTGTTTACCAGCAAAAATCAAACGTTGTTGATCTGGTG 240361 Query 143076 GTATGCCTTCTTTGTC 143091 | || |||||||| || Sbjct 240362 GGATCCCTTCTTTATC 240377 >seq275 Length=119121 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | |||||| ||||| | || ||||||||||| ||||||||||| Sbjct 71139 CCACCTCTTAATCTCAAAACCAAATGTAAAGTTGATTCTTTTTGAATGTTGTAATCAGAT 71198 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||||||||||||| |||| | |||||| ||||| || || Sbjct 71199 AAAGTTCTACCATCTTCTAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCAGGTGGA 71258 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||||||| ||| | | || | || || | | ||| ||| Sbjct 71259 ATACCTTCTTTGTCTTGAATTTTTGATTTGACATTGTCAATGGTATCAGAAGATTCAACT 71318 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAA 143175 || | || | ||||| || || || ||||| ||||| Sbjct 71319 TCTAAGGTAATGGTCTTACCAGTTAAAGTTTTAACGAA 71356 >seq292 Length=16354 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | || |||||||| | ||| ||||||||||| ||||| ||||| Sbjct 6394 CCACCTCTTAATCTTAAGACTAAATGTAATGTTGATTCTTTTTGAATGTTATAATCAGAT 6453 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||||||||||||| |||| | |||||| ||||| || || Sbjct 6454 AAAGTTCTACCATCTTCTAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCAGGTGGA 6513 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || ||||||| ||| | | || | || || | | ||| ||| Sbjct 6514 ATACCTTCTTTATCTTGAATTTTTGATTTGACATTGTCAATAGTATCAGAAGATTCAACT 6573 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || || || ||||| || || |||||||| Sbjct 6574 TCTAAGGTAATGGTTTTACCTGTTAAAGTTTTAACAAAAATTTGCAT 6620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507012093084480