Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yamadazyma_20sp._20MH-2017a_20[genbank_20GCA_5F002109505.1_202017- 04-25] 191 sequences; 10,912,061 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq180 104 3e-17 seq158 104 3e-17 >seq180 Length=546618 Score = 104 bits (114), Expect = 3e-17 Identities = 108/139 (78%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTG 146108 ||||||||| | ||| || ||||| || | |||||||| ||| || || || ||||| | Sbjct 253063 TCCACCTCTCAATCTCAAGACCAAGTGAAGGGTAGATTCCTTTTGA-ATGTTGTAATCAG 253005 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | |||||| | ||| || ||||| || || || || |||||||||||||| || || | Sbjct 253004 CCAAAGTTCTACCATCTTCCAATTGCTTACCGGCGAAGATCAATCTTTGCTGGTCTGGTG 252945 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||| || ||||| Sbjct 252944 GAATTCCTTCCTTGTCTTG 252926 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/229 (68%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| | ||| || ||||| || | ||| ||||| ||| || || || ||||| | Sbjct 252606 CCACCTCTCAATCTCAAAACCAAGTGAAGAGTGGATTCCTTTTGA-ATGTTGTAATCAGC 252548 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | |||||| | || || ||||| || || || || ||||||||||| || || || || Sbjct 252547 CAAAGTTCTACCGTCTTCCAATTGCTTACCGGCGAAGATCAATCTTTGTTGGTCTGGTGG 252488 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 ||||||||| || ||||| || || ||| ||| || Sbjct 252487 AATTCCTTCCTTGTCTTGAATCTTGGATTTGACATTGTCAATGGTGTCGGAAGATTCAAC 252428 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 ||| | ||||| || ||||| || || ||||||| ||| ||||||||| Sbjct 252427 TTCCAAAGTGATGGTCTTACCAGTCAAAGTTTTAACGAAAATTTGCATT 252379 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| | ||| || ||||| || | ||| ||||| ||| || || || ||||| | Sbjct 252834 CCACCTCTCAATCTCAAAACCAAGTGAAGAGTGGATTCCTTTTGA-ATGTTGTAATCAGC 252776 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | |||||| | || || ||||| || || || || ||||||||||| || || || || Sbjct 252775 CAAAGTTCTACCGTCTTCCAATTGCTTACCGGCGAAGATCAATCTTTGTTGGTCTGGTGG 252716 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| || ||||| Sbjct 252715 AATTCCTTCCTTGTCTTG 252698 >seq158 Length=604990 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | |||||| ||||| || | ||| ||||| || || || || || | Sbjct 572297 CCACCTCTCAATCTTAACACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGCC 572356 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||||| | ||| || ||||| || ||||| |||||||||||||| || || || ||| Sbjct 572357 AAAGTTCTTCCATCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCTGGTGGA 572416 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| || ||||| Sbjct 572417 ATTCCTTCCTTGTCTTG 572433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743524624830720