Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yamadazyma_20sp._20MH-2017a_20[genbank_20GCA_5F002109505.1_202017- 04-25] 191 sequences; 10,912,061 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq103 178 3e-39 seq180 129 1e-24 seq158 120 7e-22 >seq103 Length=1665694 Score = 178 bits (196), Expect = 3e-39 Identities = 410/607 (68%), Gaps = 22/607 (4%) Strand=Plus/Plus Query 268700 AGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTT 268759 ||||| || | || ||||| || | ||| || ||| ||||||||| |||| | Sbjct 214466 AGATTCGTCTTGTTCCCAATCAAGTACCATGAGATTTGGCAAATGTACAAAAAGGCTGAA 214525 Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACT-TAATAGATTGGAAAAA 268818 || ||||||||||||| || ||| | || || | | || | || || ||||| || Sbjct 214526 GCCTCTTTTTGGACTGCTGAGGAAATCGACTTGGGTAAAGATACTCAT-GACTGGAACAA 214584 Query 268819 TT--TAAAACCAGAA-GAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAG 268875 | ||| | || ||||| ||| | || ||| | || || || || | Sbjct 214585 CAAGTTGAACGATAACGAAAGGTTTTTTGTTTCCAGAATTTTGGCTTTCTTCGCTGCCTC 214644 Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGA 268935 |||||||||||| || ||||| | || || || || | | || || || | ||||| Sbjct 214645 TGATGGTATCGTCAATGAAAACTTGGTTGAAAACTTTTCTGCCGAAGTTCAAGTGCCTGA 214704 Query 268936 AGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAG 268995 ||||| ||||| ||||| ||||| || || ||||| || || || || | ||| Sbjct 214705 AGCCAAGTGTTTCTACGGTTTCCAAATCATGATGGAAAACATCCACTCCGAAACCTACTC 214764 Query 268996 TCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAA-GACTATTTTCTTC-- 269052 | | || || || | || || | ||| | ||| ||| |||| | || ||| Sbjct 214765 TTTGTTGATCGACTCATACATCAAGGAT-----CCAAAGGAAGCTGACT-TCTTGTTCAA 214818 Query 269053 ---TATGAGAACTATGG-ACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAA 269108 ||| ||| || || | ||| |||| |||| |||||| ||| |||||| | Sbjct 214819 CGCTATCGAAACCATTCCACAAATTAAGAGAAAAG-CTGACTGGGCTTTGAGATGGATTA 214877 Query 269109 ACGATAGCGCGCCTTA---CGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATAT 269165 | |||| || ||| ||| ||||| ||||| ||||| || || || |||||||| | Sbjct 214878 ATGATAACGATGCTTTGTTCGGTGAAAGATTAGTCGCTTTCGCTGCCGTTGAAGGTATTT 214937 Query 269166 TCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGAT 269225 ||||| || |||||||| |||| || ||||||||||||||||| | |||||||| | Sbjct 214938 TCTTTAGTGGTTCTTTTGCTTCTATTTTCTGGTTGAAGAAAAGAGGTTTAATGCCAGGTT 214997 Query 269226 TAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTT 269285 | |||||||| || |||||||| |||| ||||||||||| || ||||| || ||| Sbjct 214998 TGACTTTCTCCAATGAATTGATTTGCAGAGACGAAGGTTTGCATACAGACTTTGCATGTC 215057 Query 269286 TATTATT 269292 | ||||| Sbjct 215058 TCTTATT 215064 >seq180 Length=546618 Score = 129 bits (142), Expect = 1e-24 Identities = 153/206 (74%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || ||||| || || |||| | ||||||||||||||| | ||| || || Sbjct 252576 GTGGATTCCTTTTGAATGTTGTAATCAGCCAAAGTTCTACCGTCTTCCAATTGCTTACCG 252517 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | || ||||| || || || |||||||| || || |||||||| | ||| Sbjct 252516 GCGAAGATCAATCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGAATCTTGGATTTG 252457 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| || ||| || || | || || ||||||||||| | ||| Sbjct 252456 ACATTGTCAATGGTGTCGGAAGATTCAACTTCCAAAGTGATGGTCTTACCAGTCAAAGTT 252397 Query 104543 TTTACAAATATCTGCATTTTG-TGTA 104567 || || || || |||||| || |||| Sbjct 252396 TTAACGAAAATTTGCATTATGATGTA 252371 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || ||||| || || |||| | ||||||||||||||| | ||| || || Sbjct 252804 GTGGATTCCTTTTGAATGTTGTAATCAGCCAAAGTTCTACCGTCTTCCAATTGCTTACCG 252745 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | || ||||| || || || |||||||| || || |||||||| | ||| Sbjct 252744 GCGAAGATCAATCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGAATCTTGGATTTG 252685 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| || ||| || || | || || |||||||| || | || Sbjct 252684 ACATTGTCAATGGTGTCGGAAGATTCAACTTCCAAAGTGATGGTCTTACCGGTCAAGGTC 252625 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 252624 TTGACGAAAATTTGCAT 252608 >seq158 Length=604990 Score = 120 bits (132), Expect = 7e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || || || || ||||||| | |||||| || ||||| | ||| || ||| Sbjct 572327 GTGGATTCCTTTTGGATGTTGTAGTCAGCCAAAGTTCTTCCATCTTCCAATTGCTTACCA 572386 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| | || ||||| || || || |||||||| || || || ||||| | ||| Sbjct 572387 GCGAAAATCAATCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGATTTG 572446 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| | || || || | ||||| ||||||||||| | || Sbjct 572447 ACATTATCAATGGTGTCGGAGGACTCGACTTCCAAGGTAATGGTCTTACCAGTCAAGGTC 572506 Query 104543 TTTACAAATATCTGCATTTTG 104563 || || || |||||||| ||| Sbjct 572507 TTAACGAAAATCTGCATCTTG 572527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151395582312228