Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yamadazyma_20sp._20MH-2017a_20[genbank_20GCA_5F002109505.1_202017- 04-25] 191 sequences; 10,912,061 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq180 96.9 3e-15 seq158 86.0 5e-12 >seq180 Length=546618 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || | ||| || || || || ||||| ||| ||||||||||||||||||||||| Sbjct 252607 ACCACCTCTCAATCTCAAAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGC 252548 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || |||| |||| ||||||||| || | || || | || || || || Sbjct 252547 CAAAGTTCTACCGTCTTCCAATTGCTTACCGGCGAAGATCAATCTTTGTTGGTCTGGTGG 252488 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||||||| ||| || |||| | | ||||| |||| ||| || Sbjct 252487 AATTCCTTCCTTGTCTTGAATCTTGGATTTGACATTGTCAATGGTGTCGGAAGATTCAAC 252428 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| ||||| || | |||||| || ||||| ||||| Sbjct 252427 TTCCAAAGTGATGGTCTTACCAGTCAAAGTTTTAACGAAAATTTGCAT 252380 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || | ||| || || || || ||||| ||| ||||||||||||||||||||||| Sbjct 252835 ACCACCTCTCAATCTCAAAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGC 252776 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || |||| |||| ||||||||| || | || || | || || || || Sbjct 252775 CAAAGTTCTACCGTCTTCCAATTGCTTACCGGCGAAGATCAATCTTTGTTGGTCTGGTGG 252716 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||||||| ||| || |||| | | ||||| |||| ||| || Sbjct 252715 AATTCCTTCCTTGTCTTGAATCTTGGATTTGACATTGTCAATGGTGTCGGAAGATTCAAC 252656 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| |||||||| | || || || ||||| ||||| Sbjct 252655 TTCCAAAGTGATGGTCTTACCGGTCAAGGTCTTGACGAAAATTTGCAT 252608 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || | ||| || || || || ||||| || |||||||||||||||||||||||| Sbjct 253062 CCACCTCTCAATCTCAAGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCAGCC 253003 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | || |||| ||||||||| || | || || | ||||| || || Sbjct 253002 AAAGTTCTACCATCTTCCAATTGCTTACCGGCGAAGATCAATCTTTGCTGGTCTGGTGGA 252943 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||||||| ||| || |||| | | ||||| |||| ||| || Sbjct 252942 ATTCCTTCCTTGTCTTGAATCTTGGATTTGACATTGTCAATGGTGTCGGAAGATTCAACT 252883 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| |||||||| | || || || ||||| ||||| Sbjct 252882 TCCAAAGTGATGGTCTTACCGGTCAAGGTCTTGACGAAAATTTGCAT 252836 >seq158 Length=604990 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || | ||| |||||||| || ||||| ||| |||||||| |||||||| ||||| Sbjct 572296 ACCACCTCTCAATCTTAACACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAGC 572355 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | || |||| |||||||| || |||| || | || || || || Sbjct 572356 CAAAGTTCTTCCATCTTCCAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCTGGTGG 572415 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||||||| || || |||| | | ||||| |||| ||||| Sbjct 572416 AATTCCTTCCTTGTCTTGGATCTTGGATTTGACATTATCAATGGTGTCGGAGGACTCGAC 572475 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 || | || ||||| ||||| || | || || || |||||||||||| || Sbjct 572476 TTCCAAGGTAATGGTCTTACCAGTCAAGGTCTTAACGAAAATCTGCATCTTG 572527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421250219406191