Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yamadazyma_20sp._20MH-2017a_20[genbank_20GCA_5F002109505.1_202017- 04-25] 191 sequences; 10,912,061 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq180 154 1e-32 seq147 127 2e-24 seq158 111 1e-19 >seq180 Length=546618 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||||||||| || ||||| || ||||| | ||||| ||| | || Sbjct 252380 ATGCAAATTTTCGTTAAAACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCC 252439 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || ||||| || |||||||||||||| || |||||||| || ||| Sbjct 252440 GACACCATTGACAATGTCAAATCCAAGATTCAAGACAAGGAAGGAATTCCACCAGACCAA 252499 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || ||||| || || || || || | || | | ||||||||| Sbjct 252500 CAAAGATTGATCTTCGCCGGTAAGCAATTGGAAGACGGTAGAACTTTGGCTGATTACAAC 252559 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| |||||||| | || || |||||| ||||| | || ||| Sbjct 252560 ATTCAAAAGGAATCCACTCTTCACTTGGTTTTGAGATTGAGAGGTGGT 252607 Score = 145 bits (160), Expect = 6e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || || |||||||| || ||||| | ||||| ||| | || Sbjct 252608 ATGCAAATTTTCGTCAAGACCTTGACCGGTAAGACCATCACTTTGGAAGTTGAATCTTCC 252667 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || ||||| || |||||||||||||| || |||||||| || ||| Sbjct 252668 GACACCATTGACAATGTCAAATCCAAGATTCAAGACAAGGAAGGAATTCCACCAGACCAA 252727 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || ||||| || || || || || | || | | ||||||||| Sbjct 252728 CAAAGATTGATCTTCGCCGGTAAGCAATTGGAAGACGGTAGAACTTTGGCTGATTACAAC 252787 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| |||||||| | || || |||||| ||||| | || ||| Sbjct 252788 ATTCAAAAGGAATCCACTCTTCACTTGGTTTTGAGATTGAGAGGTGGT 252835 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || || |||||||| || ||||| | ||||| ||| | || Sbjct 252836 ATGCAAATTTTCGTCAAGACCTTGACCGGTAAGACCATCACTTTGGAAGTTGAATCTTCC 252895 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || ||||| || |||||||||||||| || |||||||| || || Sbjct 252896 GACACCATTGACAATGTCAAATCCAAGATTCAAGACAAGGAAGGAATTCCACCAGACCAG 252955 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || ||||| || || || || ||| | || | | ||||||||| Sbjct 252956 CAAAGATTGATCTTCGCCGGTAAGCAATTGGAAGATGGTAGAACTTTGGCTGATTACAAC 253015 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| ||||| ||| | || || || ||| ||||| | || || Sbjct 253016 ATTCAAAAGGAATCTACCCTTCACTTGGTCTTGAGATTGAGAGGTGG 253062 >seq147 Length=818043 Score = 127 bits (140), Expect = 2e-24 Identities = 714/1115 (64%), Gaps = 46/1115 (4%) Strand=Plus/Plus Query 128778 CTTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCC 128837 |||||| | ||||||| || ||| | || || | | ||| | |||||||||||| || Sbjct 276393 CTTGTCAATAGTAAATTGGATGGCGGCAGCAGCAGCTTGGGTTCTCAAATAGTACATACC 276452 Query 128838 TGTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACA-ATGCGTAGGTGG 128896 || || | ||| | |||||| || | ||| || | |||||| | | | | ||| Sbjct 276453 AGTCTTAAGACCCTTCTTCCAACCGTAGAAGTGCATTGAGGTCAATTTACCCATTGTTGG 276512 Query 128897 GTTGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAG 128956 || | | |||||| || ||||| ||||||||| || | | | ||||| | Sbjct 276513 GTCCT-TGATGTGAATATTCAAGGATTGGGATTGATCAATGAAAGCAGCTCTGTCGGCGG 276571 Query 128957 CCATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTA--AAGCTCTCTCAC 129014 |||| | || | || ||| |||||||| ||||| || || |||| || | | Sbjct 276572 CCATGTCGATGATATGTTTTTGGGAGATTTCCCATACCGTCTTATACAAAGC-CT-TGAT 276629 Query 129015 GTGTTTTGGTAT-TTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTC 129073 | | ||| || || |||| | || | | |||||||||| ||| || |||||| Sbjct 276630 TTCATCTGGGATGTTGGTCAAACCT-TGAATGGAACCGTTGTTTGAAATGATGTTGTTTT 276688 Query 129074 GCATCTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTA 129133 ||| |||||| | | | || | | |||||| | ||||||| ||| | | Sbjct 276689 TCATGGATTCGTTCCAAAGACCCAAATCAACCAAATCCTTCAACAAGTATGGGTTAACAA 276748 Query 129134 CTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACG 129193 ||| || || || | ||| || | | | ||| ||||| || | || || || Sbjct 276749 TTTGGAATTCTCCTGACAACACTCTTCTAGAGTACATGTTAGAAGTATATGGTTCGAAAC 276808 Query 129194 ATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCG 129253 |||| ||||| || || ||||||| || | || || ||||| ||| || | | | Sbjct 276809 ATTCGTTGTTACCCAAGATTTGAGAAGTAGAAGCAGTTGGCATAGGAGCAACCAACAATG 276868 Query 129254 AGTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCC-AGTCCCACA--TCG 129310 |||||| ||||| || || || | || || || || ||| ||||||| | ||| Sbjct 276869 AGTTTCTTAAACCATGTTGGGCCATCTTTTGCTTCAAA-GTATCCCAGTCCCATAATTCG 276927 Query 129311 ATGTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAA 129370 | ||| | | || |||||||| ||||||||||| | ||| | | | ||||| | Sbjct 276928 GT-TGGCTTTCTG-TTCCACAAATCGTATTGCAACAAACC-----TTGAGAAGCTGGAGA 276980 Query 129371 A-----GTAGGAATCGTGCACGCCGTAAGCTTT-TGCCAATTCGCAACTCGCTTCCAATG 129424 | |||||| |||| | | | | | | ||||||||| | ||||| | | Sbjct 276981 ACCTTCGTAGGATTCGTA-AGGACCTTCGATAACTGCCAATTCAATAGAGGCTTCAACAG 277039 Query 129425 CGCCAAAATAAATTGTTTCGGCAATTTTGGTGTTCAACACTTTGGCCTGGTCGCTTTCGT 129484 | || || || |||||| |||| | || || | ||||| | | ||| Sbjct 277040 CACCGTGGTAGATGGTTTCGAAGATTTGAATATTTAATTCCTTGGCTTCTTGAGAGTCGA 277099 Query 129485 ACGGCATACGCAA---CATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGG 129541 | || | | ||| |||| || || || ||||||||||| | ||||| | | || | Sbjct 277100 ATGGTAATCTCAAAGCCATG---AAAGTATCAGCCAAACCTTGGACACCCAAAGCAATTG 277156 Query 129542 GTCGATGTT-TTC-TATTGGATTTTTGTGCCGACAACAA-GGGATAGTAGTTGATGTCTA 129598 ||| |||| ||| |||||||| || | | || || || ||| |||| |||| | Sbjct 277157 GTC--TGTTCTTCATATTGGATCTTCTAGAC-TCAGGAACTGGGTAGAAGTTTCTGTCAA 277213 Query 129599 TAATTTTGTTTAAATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGT 129658 | ||| |||| || || || |||| || | | | | ||| |||| || |||| Sbjct 277214 TGATTCTGTTCAAGTTTCTGGTGACAACCTTAGAAATTTCGTGCAACTTTTCGAAGTTGT 277273 Query 129659 AC------TCGCCTACATCGATGTCGACAAATTGATTG-ACACAAATCGAGGCCAAATTG 129711 || | | ||||| | || ||||| ||| | | | ||| || ||||| || Sbjct 277274 ACCAAGTGGAGTTTTCATCGGTTTCAACAAA-AGATGGTAAAGCAATAGAAGCCAAGTTA 277332 Query 129712 CAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTT 129771 ||||||||| ||| | ||| ||| || |||||||| ||||| ||| | | Sbjct 277333 CAGACGGCAACTTCTTCAGGGTCTGAGTATTCAACAATTTCACAACACAAGTTAGAAGAT 277392 Query 129772 TTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATG 129831 || ||| | ||||| | ||||||||| | ||| |||| ||||| || ||||||| |||| Sbjct 277393 TTGATGATACCCAAGTTCTTTTGATTGGTCTTCTTGTTACAAGCGTCCTTGTACAACATG 277452 Query 129832 TACGGCGTGCCCGTTTCGACTTGCGTTTCGACAAT 129866 | || || || |||||| ||| | ||| | ||| Sbjct 277453 AAAGGAGTACCGGTTTCGGTTTGAGCTTCCAAAAT 277487 >seq158 Length=604990 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| ||||| || || || ||||| || | || | ||||| || || Sbjct 572526 AAGATGCAGATTTTCGTTAAGACCTTGACTGGTAAGACCATTACCTTGGAAGTCGAGTCC 572467 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| ||| | || || ||||| || || ||||||||||| || |||||||| || Sbjct 572466 TCCGACACCATTGATAATGTCAAATCCAAGATCCAAGACAAGGAAGGAATTCCACCAGAC 572407 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 |||||| | | || || || || || || || || ||| | || | | || ||| Sbjct 572406 CAACAAAGATTGATTTTCGCTGGTAAGCAATTGGAAGATGGAAGAACTTTGGCTGACTAC 572347 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| ||||| |||||||| | || || || || ||||| | || ||| Sbjct 572346 AACATCCAAAAGGAATCCACTCTTCACTTGGTGTTAAGATTGAGAGGTGGT 572296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727022951915