Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yamadazyma_20sp._20MH-2017a_20[genbank_20GCA_5F002109505.1_202017- 04-25] 191 sequences; 10,912,061 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq180 147 4e-30 seq103 143 5e-29 >seq180 Length=546618 Score = 147 bits (162), Expect = 4e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || || || || | ||| | || || ||| || ||||| Sbjct 252609 ATACCACCTCTCAATCTCAAAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCA 252550 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| || |||| |||||||| ||||| || || || ||||| |||||||| ||| Sbjct 252549 GCCAAAGTTCTACCGTCTTCCAATTGCTTACCGGCGAAGATCAATCTTTGTTGGTCTGGT 252490 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || ||||| || || ||| ||||| || || || || ||||| Sbjct 252489 GGAATTCCTTCCTTGTCTTGAATCTTGGATTTGACATTGTCAATGGTGTCGGAAGATTCA 252430 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | ||| ||||| |||||||| || ||||||| ||| || |||||| Sbjct 252429 ACTTCCAAAGTGATGGTCTTACCAGTCAAAGTTTTAACGAAAATTTGCATT 252379 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || || || || | ||| | || || ||| || ||||| Sbjct 252837 ATACCACCTCTCAATCTCAAAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCA 252778 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| || |||| |||||||| ||||| || || || ||||| |||||||| ||| Sbjct 252777 GCCAAAGTTCTACCGTCTTCCAATTGCTTACCGGCGAAGATCAATCTTTGTTGGTCTGGT 252718 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || ||||| || || ||| ||||| || || || || ||||| Sbjct 252717 GGAATTCCTTCCTTGTCTTGAATCTTGGATTTGACATTGTCAATGGTGTCGGAAGATTCA 252658 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| ||||| ||||| || || || || | ||| || ||||| Sbjct 252657 ACTTCCAAAGTGATGGTCTTACCGGTCAAGGTCTTGACGAAAATTTGCAT 252608 >seq103 Length=1665694 Score = 143 bits (158), Expect = 5e-29 Identities = 366/547 (67%), Gaps = 19/547 (3%) Strand=Plus/Minus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 |||||||| ||| |||| | ||||| || || || || || || | || || || Sbjct 215346 TTTTGGTAATCACTAACTCTCTTTTCAAAGAAATTGGTCTTACCGGCCAAGGAGATGTTT 215287 Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATA-CATATAA 38950 | ||| || || || || || ||| ||| ||| || || || | | | || ||| Sbjct 215286 TCCATGAAGTCGAAGGGGTTGGTGGCATTGTAAACCTTCTCGT-TACCTAGAGCAACTAA 215228 Query 38951 TAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA 39010 ||||||||| || ||||| || || ||||| |||| || | ||| ||||||||||| || Sbjct 215227 TAATCTATCAGCGACAAACTCCACGTATTGACACATCAACTTACAGTTCATACCCAACAA 215168 Query 39011 TTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattat 39070 | | ||| || |||||| | |||| ||||| || | ||||||| | || || Sbjct 215167 ACTGATTGGCAAAGCATCAGTGAAGTATTCCTTTTCAATAGCAACAGCTTCAGTGATGAT 215108 Query 39071 cataattatattattttttgataatttatattt----aatatgattcgcatataGTAAAC 39126 | || | |||| | | | | | ||| ||| || | ||| || | || Sbjct 215107 --TTGTTCGACGATTTCTGGGTCTGGTCTGTTTTGCAAATGGGA---GAATA-AG-AGAC 215055 Query 39127 ATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATC 39186 ||||||| || ||||| ||||||||||| || | || |||||||| ||||| || | Sbjct 215054 ATGCAAAGTCTGTATGCAAACCTTCGTCTCTGCAAATCAATTCATTGGAGAAAGTCAAAC 214995 Query 39187 CTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATA 39246 |||||||||| ||||| || || | ||| || || || |||||| || | |||||| | Sbjct 214994 CTGGCATTAAACCTCTTTTCTTCAACCAGAAAATAGAAGCAAAAGAACCACTAAAGAAAA 214935 Query 39247 TACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAAC-ATTAAT--TTATCATCTA 39303 |||| || || || || || | || |||| | || ||| | || ||||||| Sbjct 214934 TACCTTCAACGGCAGCGAAAGCGACTAATCTTTCACCGAACAAAGCATCGTTATCAT--- 214878 Query 39304 AAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTT 39363 |||||| | | ||||| || |||||| | || || || || |||| ||||| | Sbjct 214877 TAATCCATCTCAAAGCCCAGTCAGCTTTTCTCTTAATTTGTGGAATGGTTTCGATAGCGT 214818 Query 39364 TAAATAA 39370 | || || Sbjct 214817 TGAACAA 214811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905133838987800