Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01]
44 sequences; 20,877,144 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq3 145 2e-29
seq8 111 3e-19
>seq3
Length=1361780
Score = 145 bits (160), Expect = 2e-29
Identities = 316/469 (67%), Gaps = 8/469 (2%)
Strand=Plus/Plus
Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232
|||| |||||| ||| | |||| | || || ||||| | || || || ||||
Sbjct 14757 TTTGGCGAGCGGCTCATTGCCTTTGCCGCCGTCGAGGGTATCTTTTTCTCAGGCTCTTTC 14816
Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292
| ||||||| ||||| ||| |||| | ||||| |||||| | || ||||||
Sbjct 14817 GCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTCACCTTCTCCAACGAG 14876
Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCT 230351
|||| ||| ||||||||||| || || | | || | | || | | || | ||
Sbjct 14877 CTCATTTCTCGAGACGAGGGTCTGCA-CACCGACTTTGCCTGTCTGCTCTTCTCTCACCT 14935
Query 230352 CCAGAACAAGCTACCATTCGAGACG---GTCAAACAAATCATTACAGAAGCAGTTGAAAA 230408
| ||||| | ||| | | ||| | ||| | | ||||| || || |||| |
Sbjct 14936 CGAGAAC---CGACCCTCCAAGAAGATTGTCGAGGACGTCATTGTCGAGGCTGTTGGCAT 14992
Query 230409 CGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACT 230468
||| |||||||| | |||||| | || ||| | || | ||||||||||| | ||
Sbjct 14993 CGAGCAGGAGTTCCTGACCGACGCTCTGCCCTGTGGTCTGCTCGGCATGAACGCCAAGCT 15052
Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528
||| | |||||||| || || || |||||||| | | ||||| || || || ||
Sbjct 15053 CATGTGCCAGTACATTGAGTTTGTCGCCGACCGACTGCTGGTTGCTCTCGGCAACACCAA 15112
Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588
|| |||||||| | |||||||| | || |||||| ||| || || || |||||
Sbjct 15113 GGTCTACAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGCCGGTAAGAC 15172
Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637
|||||||||||| ||||| ||| ||||| |||| | |||| || |||
Sbjct 15173 CAACTTCTTCGAGAAGCGAGTCTCCGACTACCAGAAGGCTGGCGTCATG 15221
>seq8
Length=1170456
Score = 111 bits (122), Expect = 3e-19
Identities = 157/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 319810 CCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTCA 319869
||||| | ||||| || ||| || ||||| | | ||| | |||||| || ||
Sbjct 169619 CCGTCAATGTCGTGGTCGACGAAAACAGTTCGACACTCCTCCTGGGTGGGGAAGCCCTCG 169678
Query 319870 AGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACAC 319929
| ||||||||| |||| || ||||| || || || ||||| || ||||| || |||||
Sbjct 169679 ACCTGGCCGTTGGCAATGGCTCGCATAAGAGTGGACTTACCGGCACCGTTGGGACCACAG 169738
Query 319930 AGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCCA 319989
|||||||| || || || || || | | | || |||||| ||||| || ||
Sbjct 169739 AGACCGTATCGTCGGCCTCGCTTAAGTCGCAGCTGGGTTCGGTTCAGCAGAATCTTGGCA 169798
Query 319990 CCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 320030
|| || || ||||| || ||||| | |||||||||||||||
Sbjct 169799 CCGTAAGCAAGAGAGAACTCACAGTTACACAGATCCTCACC 169839
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057823403651720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |