Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3 145 2e-29 seq8 111 3e-19 >seq3 Length=1361780 Score = 145 bits (160), Expect = 2e-29 Identities = 316/469 (67%), Gaps = 8/469 (2%) Strand=Plus/Plus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 |||| |||||| ||| | |||| | || || ||||| | || || || |||| Sbjct 14757 TTTGGCGAGCGGCTCATTGCCTTTGCCGCCGTCGAGGGTATCTTTTTCTCAGGCTCTTTC 14816 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 | ||||||| ||||| ||| |||| | ||||| |||||| | || |||||| Sbjct 14817 GCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTCACCTTCTCCAACGAG 14876 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCT 230351 |||| ||| ||||||||||| || || | | || | | || | | || | || Sbjct 14877 CTCATTTCTCGAGACGAGGGTCTGCA-CACCGACTTTGCCTGTCTGCTCTTCTCTCACCT 14935 Query 230352 CCAGAACAAGCTACCATTCGAGACG---GTCAAACAAATCATTACAGAAGCAGTTGAAAA 230408 | ||||| | ||| | | ||| | ||| | | ||||| || || |||| | Sbjct 14936 CGAGAAC---CGACCCTCCAAGAAGATTGTCGAGGACGTCATTGTCGAGGCTGTTGGCAT 14992 Query 230409 CGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACT 230468 ||| |||||||| | |||||| | || ||| | || | ||||||||||| | || Sbjct 14993 CGAGCAGGAGTTCCTGACCGACGCTCTGCCCTGTGGTCTGCTCGGCATGAACGCCAAGCT 15052 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 ||| | |||||||| || || || |||||||| | | ||||| || || || || Sbjct 15053 CATGTGCCAGTACATTGAGTTTGTCGCCGACCGACTGCTGGTTGCTCTCGGCAACACCAA 15112 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 || |||||||| | |||||||| | || |||||| ||| || || || ||||| Sbjct 15113 GGTCTACAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGCCGGTAAGAC 15172 Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 |||||||||||| ||||| ||| ||||| |||| | |||| || ||| Sbjct 15173 CAACTTCTTCGAGAAGCGAGTCTCCGACTACCAGAAGGCTGGCGTCATG 15221 >seq8 Length=1170456 Score = 111 bits (122), Expect = 3e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 319810 CCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTCA 319869 ||||| | ||||| || ||| || ||||| | | ||| | |||||| || || Sbjct 169619 CCGTCAATGTCGTGGTCGACGAAAACAGTTCGACACTCCTCCTGGGTGGGGAAGCCCTCG 169678 Query 319870 AGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACAC 319929 | ||||||||| |||| || ||||| || || || ||||| || ||||| || ||||| Sbjct 169679 ACCTGGCCGTTGGCAATGGCTCGCATAAGAGTGGACTTACCGGCACCGTTGGGACCACAG 169738 Query 319930 AGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCCA 319989 |||||||| || || || || || | | | || |||||| ||||| || || Sbjct 169739 AGACCGTATCGTCGGCCTCGCTTAAGTCGCAGCTGGGTTCGGTTCAGCAGAATCTTGGCA 169798 Query 319990 CCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 320030 || || || ||||| || ||||| | ||||||||||||||| Sbjct 169799 CCGTAAGCAAGAGAGAACTCACAGTTACACAGATCCTCACC 169839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823403651720