Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3 187 3e-42 >seq3 Length=1361780 Score = 187 bits (206), Expect = 3e-42 Identities = 399/592 (67%), Gaps = 8/592 (1%) Strand=Plus/Minus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 || ||| || || ||| ||| ||||||||||||| | ||| | |||||||| || || Sbjct 14921 CAGACAGGCAAAGTCGGTGTGCAGACCCTCGTCTCGAGAAATGAGCTCGTTGGAGAAGGT 14862 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 24250 ||| |||||||| || || ||||| || ||||| || ||||| || || || || || || Sbjct 14861 GAGGCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCTGAGAA 14802 Query 24251 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG---CGCTGTC 24307 || || || || || || ||||||||||| || | || ||| | || | ||| Sbjct 14801 AAAGATACCCTCGACGGCGGCAAAGGCAATGAGCCGCTCGCCAAAGGTGGACTCCTCGTC 14742 Query 24308 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 |||||||| ||||||| ||||||||||| || | || || || ||||| || || Sbjct 14741 GGAAATCCACTTGAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGC 14682 Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427 || || || |||||| || || || || | ||||| || || | || || Sbjct 14681 GTTGAACAGGTAGTTTCGCTCCTTGGGGTCCTTGATGTATGTGTCGATGAGCAGCGAGTA 14622 Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 24487 ||||||| || ||||| || || || || || |||||||| || | ||||||| Sbjct 14621 GGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGG 14562 Query 24488 AATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 24547 | ||| || || | ||||| || | | || || || || |||||||| ||| Sbjct 14561 AGCCTGGACCTCGCCGGAGAATCGCTCCACCAGGTTCTCGTTGACGATTCCGTCGGAGGC 14502 Query 24548 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGT---TTAT 24603 ||||| || |||| || || || || || ||||| | |||| ||| || | Sbjct 14501 AGCAAAGAAGGCCAGAACGTGAGAGATGAAGAATCGCTCGTC-GTTGTTGAGTCGGTTCT 14443 Query 24604 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 24663 ||| || || || || | ||| | || || | ||||| || || ||||| | Sbjct 14442 CCCAGTCGCCCATGTCCTTGCCGAGATCGATCTCCTCAGCAGTCCAGAAGGAAGCCTCAG 14383 Query 24664 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 |||| || ||||| | |||||| ||||| || || || || || | ||||| Sbjct 14382 CCTTCTTGTACATCTGCCAGATCTCATGGTACTGGATGGGGAAGAGCACAAA 14331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721273453120