Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3 475 4e-129 seq14 129 6e-25 seq4 129 6e-25 >seq3 Length=1361780 Score = 475 bits (526), Expect = 4e-129 Identities = 628/862 (73%), Gaps = 13/862 (2%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| ||||| |||||| ||| ||||| ||| | |||||||| || |||| || Sbjct 14301 GAGCCTCTGCTCAAGGAGAACGGCCGACGGTTTGTGCTCTTCCCCATCCAGTACCATGAG 14360 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||| | |||||| | || || Sbjct 14361 ATCTGGCAGATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATCGATCTC 14420 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| | ||||||||||| || | ||| || ||||||| |||||| Sbjct 14421 GGCAAGGACATGGGCGACTGGGAGAACCGACTCAACAACGACGAGCGATTCTTCATCTCT 14480 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| |||||||| || || ||| |||||| |||||||||||||| ||||| ||||| Sbjct 14481 CACGTTCTGGCCTTCTTTGCTGCCTCCGACGGAATCGTCAACGAGAACCTGGTGGAGCGA 14540 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | ||||| |||| ||||||| ||||||||||||||| |||||| ||| Sbjct 14541 TTCTCCGGCGAGGTCCAGGCTCCCGAGGCCAAGTGCTTCTACGGCTTCCAGATCATGATG 14600 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCG 116929 |||||| | |||||||||| || ||| ||||||||||| ||| | | | | | Sbjct 14601 GAGAACATCCACTCGGAAACCTACTCGCTGCTCATCGACACATACATCAAGGACCCCAAG 14660 Query 116930 GAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCC 116989 ||| ||| || | | ||| |||||||||||||| || || ||| |||| |||||||| Sbjct 14661 GAGC-GAAACTACCT--GTTCAACGCCATCGAGACCATCCCCTGCATCAAGAAGAAGGCC 14717 Query 116990 GAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCC 117049 || ||||| || ||||| ||| | ||| || |||| |||||||| || | ||| Sbjct 14718 GACTGGGCTCTCAAGTGGATTTCCGACGAGGAGTCCACCTTTGGCGAGCGGCTCATTGCC 14777 Query 117050 TTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAG 117109 || || ||||||||||| |||| || || ||| ||||||| |||| || ||||||||| Sbjct 14778 TTTGCCGCCGTCGAGGGTATCTTTTTCTCAGGCTCTTTCGCCTCCATCTTCTGGCTCAAG 14837 Query 117110 AAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGT 117169 || || || |||||||||||||| || ||| |||||||||||| || | ||||||||| Sbjct 14838 AAGCGAGGTCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATTTCTCGAGACGAGGGT 14897 Query 117170 CTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCG 117229 ||||| ||||||||||||| |||| ||| || | | | | ||||| | | | Sbjct 14898 CTGCACACCGACTTTGCCTGTCTGCTCTTCTCTCACCTCGAGAACCGACCCTCCAAGAAG 14957 Query 117230 CGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCG 117289 ||| ||| || | ||| || || | |||||||||| ||||| ||||| || Sbjct 14958 ATTGTCGAGGACGTCATTGTCGAGGCTGTTGGCATCGAGCAGGAGTTCCTGACCGACGCT 15017 Query 117290 CTG-CCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCG 117347 ||| || ||| ||||||| || | || || || | |||| || ||||| ||||| | Sbjct 15018 CTGCCCTGTG-GTCTGCTCGGCATGAA-CGCCAAGCTCATGTGCCAGTACATTGAGTTTG 15075 Query 117348 TCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGC 117407 |||||||| | |||||| | | || | | | ||||| ||||||| | ||||||| Sbjct 15076 TCGCCGACCGACTGCTGGTTGCTCTCGGCAACACCAAGGTCTACAACTCCACCAACCCCT 15135 Query 117408 TGGACTTTATGAACCTCATCTC 117429 | ||||| ||| | |||||| Sbjct 15136 TCGACTTCATGGAGAACATCTC 15157 Score = 138 bits (152), Expect = 1e-27 Identities = 161/215 (75%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG 40750 ||||||| || || || || || || ||||| || |||||| |||| || || || | | Sbjct 557646 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACTATCACCCTCGAGGTGGAGTCCTCTG 557705 Query 40751 ACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | | |||| ||||| || || | ||||| ||||| |||||| |||||||| Sbjct 557706 ACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAG 557764 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||||| || | ||| ||||| ||||| || |||| || || || ||||||||| Sbjct 557765 CAGCGACTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTTTCTGACTACAAC 557824 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| |||| || ||||| || |||| Sbjct 557825 ATCCAGAAGGAGTCCACTCTCCATCTGGTTCTGCG 557859 >seq14 Length=605277 Score = 129 bits (142), Expect = 6e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || |||||||| |||| || || || || Sbjct 299935 ATGCAGATCTTTGTCAAGACCCTGACTGGAAAGACCATCACTCTCGAGGTTGAGTCCTCC 299876 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || |||| ||||| ||||| || ||| |||||||| Sbjct 299875 GACACCATTGACAATGTCAAGTCTAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAG 299816 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||||| || | || || || ||||| || |||| || |||||| ||||||||| Sbjct 299815 CAGCGACTGATTTTTGCTGGAAAGCAGCTTGAGGACGGCCGAACCCTCTCTGACTACAAC 299756 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || ||||| || Sbjct 299755 ATCCAGAAGGAGTCCACTCTCCATCTGGT 299727 Score = 120 bits (132), Expect = 3e-22 Identities = 135/178 (76%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 40723 ACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCT 40781 ||||| ||| | || ||||| | | |||| | | | |||| ||||| || |||| Sbjct 298956 ACCATTACCCTTGAGGTCGAGTCTTCTGACACCATCGACAACG-TCAAGTCCAAGATTCA 298898 Query 40782 CGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGA 40841 ||||| ||||| |||||| |||||||||| ||||| |||| ||| || || |||||||| Sbjct 298897 GGACAAGGAGGGTATCCCCCCGGACCAGCAGCGACTTATCTTCGCCGGTAAGCAGCTGGA 298838 Query 40842 CGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||| || ||||| ||||||||||||||||||||| |||| || || || ||| Sbjct 298837 GGACGGTCGAACCCTTTCCGACTACAACATCCAGAAGGAATCCACTCTCCACCTTGTG 298780 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||| || ||| |||||||||| ||||| || | ||| || || ||||| || Sbjct 300070 GACAAGGAGGGTATTCCCCCGGACCAGCAGCGACTGATTTTCGCTGGAAAGCAGCTTGAG 300011 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || | || || ||| || |||||||||||||||||| | || || ||||| || Sbjct 300010 GATGGTCGAACTCTCTCTGATTACAACATCCAGAAGGAGTCTACCCTTCATCTGGT 299955 >seq4 Length=1325655 Score = 129 bits (142), Expect = 6e-25 Identities = 161/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 40688 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA 40747 ||||||| || || || || || || || || || || |||||| | || || || | Sbjct 386584 AAATGCAGATCTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTGGAGTCTT 386643 Query 40748 CCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | |||| ||||| || || | ||||| ||||| || ||| ||||| Sbjct 386644 CCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGAC 386702 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| ||||| |||| ||| || || ||||| || |||| || ||||| |||||| Sbjct 386703 CAGCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTAC 386762 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||||| |||| || ||||| || |||| Sbjct 386763 AACATCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCG 386800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218916629440