Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01]
44 sequences; 20,877,144 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq3 475 4e-129
seq14 129 6e-25
seq4 129 6e-25
>seq3
Length=1361780
Score = 475 bits (526), Expect = 4e-129
Identities = 628/862 (73%), Gaps = 13/862 (2%)
Strand=Plus/Plus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635
||||| ||||| |||||| ||| ||||| ||| | |||||||| || |||| ||
Sbjct 14301 GAGCCTCTGCTCAAGGAGAACGGCCGACGGTTTGTGCTCTTCCCCATCCAGTACCATGAG 14360
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||| ||||| || |||||||| | |||||| | || ||
Sbjct 14361 ATCTGGCAGATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATCGATCTC 14420
Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752
|||||||| | ||||||||||| || | ||| || ||||||| ||||||
Sbjct 14421 GGCAAGGACATGGGCGACTGGGAGAACCGACTCAACAACGACGAGCGATTCTTCATCTCT 14480
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||||| |||||||| || || ||| |||||| |||||||||||||| ||||| |||||
Sbjct 14481 CACGTTCTGGCCTTCTTTGCTGCCTCCGACGGAATCGTCAACGAGAACCTGGTGGAGCGA 14540
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| | ||||| |||| ||||||| ||||||||||||||| |||||| |||
Sbjct 14541 TTCTCCGGCGAGGTCCAGGCTCCCGAGGCCAAGTGCTTCTACGGCTTCCAGATCATGATG 14600
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCG 116929
|||||| | |||||||||| || ||| ||||||||||| ||| | | | | |
Sbjct 14601 GAGAACATCCACTCGGAAACCTACTCGCTGCTCATCGACACATACATCAAGGACCCCAAG 14660
Query 116930 GAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCC 116989
||| ||| || | | ||| |||||||||||||| || || ||| |||| ||||||||
Sbjct 14661 GAGC-GAAACTACCT--GTTCAACGCCATCGAGACCATCCCCTGCATCAAGAAGAAGGCC 14717
Query 116990 GAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCC 117049
|| ||||| || ||||| ||| | ||| || |||| |||||||| || | |||
Sbjct 14718 GACTGGGCTCTCAAGTGGATTTCCGACGAGGAGTCCACCTTTGGCGAGCGGCTCATTGCC 14777
Query 117050 TTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAG 117109
|| || ||||||||||| |||| || || ||| ||||||| |||| || |||||||||
Sbjct 14778 TTTGCCGCCGTCGAGGGTATCTTTTTCTCAGGCTCTTTCGCCTCCATCTTCTGGCTCAAG 14837
Query 117110 AAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGT 117169
|| || || |||||||||||||| || ||| |||||||||||| || | |||||||||
Sbjct 14838 AAGCGAGGTCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATTTCTCGAGACGAGGGT 14897
Query 117170 CTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCG 117229
||||| ||||||||||||| |||| ||| || | | | | ||||| | | |
Sbjct 14898 CTGCACACCGACTTTGCCTGTCTGCTCTTCTCTCACCTCGAGAACCGACCCTCCAAGAAG 14957
Query 117230 CGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCG 117289
||| ||| || | ||| || || | |||||||||| ||||| ||||| ||
Sbjct 14958 ATTGTCGAGGACGTCATTGTCGAGGCTGTTGGCATCGAGCAGGAGTTCCTGACCGACGCT 15017
Query 117290 CTG-CCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCG 117347
||| || ||| ||||||| || | || || || | |||| || ||||| ||||| |
Sbjct 15018 CTGCCCTGTG-GTCTGCTCGGCATGAA-CGCCAAGCTCATGTGCCAGTACATTGAGTTTG 15075
Query 117348 TCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGC 117407
|||||||| | |||||| | | || | | | ||||| ||||||| | |||||||
Sbjct 15076 TCGCCGACCGACTGCTGGTTGCTCTCGGCAACACCAAGGTCTACAACTCCACCAACCCCT 15135
Query 117408 TGGACTTTATGAACCTCATCTC 117429
| ||||| ||| | ||||||
Sbjct 15136 TCGACTTCATGGAGAACATCTC 15157
Score = 138 bits (152), Expect = 1e-27
Identities = 161/215 (75%), Gaps = 2/215 (1%)
Strand=Plus/Plus
Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG 40750
||||||| || || || || || || ||||| || |||||| |||| || || || | |
Sbjct 557646 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACTATCACCCTCGAGGTGGAGTCCTCTG 557705
Query 40751 ACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
||| | | | |||| ||||| || || | ||||| ||||| |||||| ||||||||
Sbjct 557706 ACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAG 557764
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| ||||| || | ||| ||||| ||||| || |||| || || || |||||||||
Sbjct 557765 CAGCGACTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTTTCTGACTACAAC 557824
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|||||||||||| |||| || ||||| || ||||
Sbjct 557825 ATCCAGAAGGAGTCCACTCTCCATCTGGTTCTGCG 557859
>seq14
Length=605277
Score = 129 bits (142), Expect = 6e-25
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || || || |||||||| |||| || || || ||
Sbjct 299935 ATGCAGATCTTTGTCAAGACCCTGACTGGAAAGACCATCACTCTCGAGGTTGAGTCCTCC 299876
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||||| || |||| ||||| ||||| || ||| ||||||||
Sbjct 299875 GACACCATTGACAATGTCAAGTCTAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAG 299816
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| ||||| || | || || || ||||| || |||| || |||||| |||||||||
Sbjct 299815 CAGCGACTGATTTTTGCTGGAAAGCAGCTTGAGGACGGCCGAACCCTCTCTGACTACAAC 299756
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||||||||| |||| || ||||| ||
Sbjct 299755 ATCCAGAAGGAGTCCACTCTCCATCTGGT 299727
Score = 120 bits (132), Expect = 3e-22
Identities = 135/178 (76%), Gaps = 2/178 (1%)
Strand=Plus/Minus
Query 40723 ACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCT 40781
||||| ||| | || ||||| | | |||| | | | |||| ||||| || ||||
Sbjct 298956 ACCATTACCCTTGAGGTCGAGTCTTCTGACACCATCGACAACG-TCAAGTCCAAGATTCA 298898
Query 40782 CGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGA 40841
||||| ||||| |||||| |||||||||| ||||| |||| ||| || || ||||||||
Sbjct 298897 GGACAAGGAGGGTATCCCCCCGGACCAGCAGCGACTTATCTTCGCCGGTAAGCAGCTGGA 298838
Query 40842 CGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
|||| || ||||| ||||||||||||||||||||| |||| || || || |||
Sbjct 298837 GGACGGTCGAACCCTTTCCGACTACAACATCCAGAAGGAATCCACTCTCCACCTTGTG 298780
Score = 87.8 bits (96), Expect = 2e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| ||||| || ||| |||||||||| ||||| || | ||| || || ||||| ||
Sbjct 300070 GACAAGGAGGGTATTCCCCCGGACCAGCAGCGACTGATTTTCGCTGGAAAGCAGCTTGAG 300011
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|| | || || ||| || |||||||||||||||||| | || || ||||| ||
Sbjct 300010 GATGGTCGAACTCTCTCTGATTACAACATCCAGAAGGAGTCTACCCTTCATCTGGT 299955
>seq4
Length=1325655
Score = 129 bits (142), Expect = 6e-25
Identities = 161/218 (74%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 40688 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA 40747
||||||| || || || || || || || || || || |||||| | || || || |
Sbjct 386584 AAATGCAGATCTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTGGAGTCTT 386643
Query 40748 CCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
|||||| | | | |||| ||||| || || | ||||| ||||| || ||| |||||
Sbjct 386644 CCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGAC 386702
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| ||||| |||| ||| || || ||||| || |||| || ||||| ||||||
Sbjct 386703 CAGCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTAC 386762
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||||||||||||||| |||| || ||||| || ||||
Sbjct 386763 AACATCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCG 386800
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515218916629440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |