Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01]
44 sequences; 20,877,144 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq3 100 2e-16
seq14 93.3 4e-14
seq4 91.5 1e-13
>seq3
Length=1361780
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
||||||| || | || || |||| |||| || ||||| || || |||||||| ||
Sbjct 557873 TACCTCCTCGGAGTCGCAGAACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 557814
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
| ||| || ||||||||||| || || ||| | || || |||||||| || || |
Sbjct 557813 AAAGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGG 557754
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| || ||||||||||| || || || || | || | |||||| | | ||| |
Sbjct 557753 GGATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCA 557694
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA 118737
|||||| ||| | || ||||| || || || || ||||| || ||||
Sbjct 557693 CCTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 557646
>seq14
Length=605277
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| |||| || ||||| || || |||||||| || | || || |||||
Sbjct 299727 ACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCGTCCTCA 299786
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| |||||||| | || || |||||||| || || || || ||||||||||| |
Sbjct 299787 AGCTGCTTTCCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGA 299846
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | || | |||||| | | ||| ||||||| || | || ||
Sbjct 299847 ATCTTAGACTTGACATTGTCAATGGTGTCGGAGGACTCAACCTCGAGAGTGATGGTCTTT 299906
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| ||||| || || ||||| ||||||||
Sbjct 299907 CCAGTCAGGGTCTTGACAAAGATCTGCAT 299935
Score = 84.2 bits (92), Expect = 2e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|||||||| || || ||||||||||| | ||| || |||||| ||||| ||||||
Sbjct 299967 GTAGACTCCTTCTGGATGTTGTAATCAGAGAGAGTTCGACCATCCTCAAGCTGCTTTCCA 300026
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
||| | || || |||||||| || || || || |||||||||||
Sbjct 300027 GCGAAAATCAGTCGCTGCTGGTCCGGGGGAATACCCTCCTTGTC 300070
>seq4
Length=1325655
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595
|||| || ||||| || || |||||||| || | || || |||||||||||
Sbjct 386788 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCGTCCTCGAGCTGC 386729
Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655
|| || ||| |||| || |||||||| || || || || ||||||||||| || ||
Sbjct 386728 TTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTG 386669
Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715
|| || | |||| |||||| | ||| ||||| | ||| | || || |||||
Sbjct 386668 GACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCGGTA 386609
Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738
|| || || ||||| ||||||||
Sbjct 386608 AGGGTCTTGACAAAGATCTGCAT 386586
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433830167358448
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |