Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01]
44 sequences; 20,877,144 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq3 127 2e-24
seq4 116 4e-21
seq14 111 2e-19
>seq3
Length=1361780
Score = 127 bits (140), Expect = 2e-24
Identities = 166/227 (73%), Gaps = 2/227 (1%)
Strand=Plus/Minus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
||||||| | |||| |||| ||| | ||| |||||| || || ||||| ||||
Sbjct 557871 CCTCCTCGGAGTCGCAGAACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 557812
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
||||| || |||| || |||||||| || ||||| || |||||||||||||| | ||
Sbjct 557811 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGG 557752
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135
| | |||||||||| ||| || |||| ||| | | | ||||| || |||||
Sbjct 557751 ATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCAATGGTGTCAGAGGACTCCAC 557693
Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCA 43182
|||| ||||| || ||||| || || ||||| |||||||||||||
Sbjct 557692 CTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 557646
>seq4
Length=1325655
Score = 116 bits (128), Expect = 4e-21
Identities = 158/218 (72%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||| || | ||| | ||| |||||| || || ||||| |||| || || || ||
Sbjct 386800 CGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCG 386741
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || ||||||||||| ||||| || |||||||||||||| | || | | |||||||
Sbjct 386740 TCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTG 386681
Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
||| ||| || |||| ||| | | | |||||| || ||||| || | |||||
Sbjct 386680 TCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 386622
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTT 43185
|| || || || || ||||| |||||||| |||||||
Sbjct 386621 AGTCTTACCGGTAAGGGTCTTGACAAAGATCTGCATTT 386584
>seq14
Length=605277
Score = 111 bits (122), Expect = 2e-19
Identities = 152/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034
|||| ||| | ||| |||||| || || ||||| |||| || || || |||| ||
Sbjct 299727 ACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCGTCCTCA 299786
Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094
|||||||| ||||| || || |||||||||||||| | || | | |||||||||| ||
Sbjct 299787 AGCTGCTTTCCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCC-TG 299845
Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153
| | || | |||| | | | |||||| || || || |||| |||||||| ||
Sbjct 299846 AATCTTAGACTTGACATTGTCAATGGTGTCGGAGGACTCAACCTCGAGAGTGATGGTCTT 299905
Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || || ||||| |||||||| |||||
Sbjct 299906 TCCAGTCAGGGTCTTGACAAAGATCTGCAT 299935
Score = 87.8 bits (96), Expect = 2e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || |||||||||| ||||| || | || || |||||||| ||||||||
Sbjct 299972 CTCCTTCTGGATGTTGTAATCAGAGAGAGTTCGACCATCCTCAAGCTGCTTTCCAGCGAA 300031
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099
|| |||||||||||||| | || | | |||||||||| ||| ||
Sbjct 300032 AATCAGTCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTT 300079
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571817285500320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |