Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq3 127 2e-24 seq4 116 4e-21 seq14 111 2e-19 >seq3 Length=1361780 Score = 127 bits (140), Expect = 2e-24 Identities = 166/227 (73%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||| | |||| |||| ||| | ||| |||||| || || ||||| |||| Sbjct 557871 CCTCCTCGGAGTCGCAGAACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 557812 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || |||| || |||||||| || ||||| || |||||||||||||| | || Sbjct 557811 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGG 557752 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | | |||||||||| ||| || |||| ||| | | | ||||| || ||||| Sbjct 557751 ATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCAATGGTGTCAGAGGACTCCAC 557693 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCA 43182 |||| ||||| || ||||| || || ||||| ||||||||||||| Sbjct 557692 CTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 557646 >seq4 Length=1325655 Score = 116 bits (128), Expect = 4e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| || | ||| | ||| |||||| || || ||||| |||| || || || || Sbjct 386800 CGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCG 386741 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || ||||||||||| ||||| || |||||||||||||| | || | | ||||||| Sbjct 386740 TCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTG 386681 Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| || |||| ||| | | | |||||| || ||||| || | ||||| Sbjct 386680 TCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 386622 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTT 43185 || || || || || ||||| |||||||| ||||||| Sbjct 386621 AGTCTTACCGGTAAGGGTCTTGACAAAGATCTGCATTT 386584 >seq14 Length=605277 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||| ||| | ||| |||||| || || ||||| |||| || || || |||| || Sbjct 299727 ACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCGTCCTCA 299786 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| ||||| || || |||||||||||||| | || | | |||||||||| || Sbjct 299787 AGCTGCTTTCCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCC-TG 299845 Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | | || | |||| | | | |||||| || || || |||| |||||||| || Sbjct 299846 AATCTTAGACTTGACATTGTCAATGGTGTCGGAGGACTCAACCTCGAGAGTGATGGTCTT 299905 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || ||||| |||||||| ||||| Sbjct 299906 TCCAGTCAGGGTCTTGACAAAGATCTGCAT 299935 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||||| ||||| || | || || |||||||| |||||||| Sbjct 299972 CTCCTTCTGGATGTTGTAATCAGAGAGAGTTCGACCATCCTCAAGCTGCTTTCCAGCGAA 300031 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 || |||||||||||||| | || | | |||||||||| ||| || Sbjct 300032 AATCAGTCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTT 300079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817285500320