Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq26 138 2e-27 seq24 114 3e-20 >seq26 Length=35697 Score = 138 bits (152), Expect = 2e-27 Identities = 272/400 (68%), Gaps = 22/400 (6%) Strand=Plus/Minus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || || ||| |||| ||| |||| ||||||||||| ||||||||||| || | || || Sbjct 24472 CTGCCACATATGCTCTTCTACGGGCCTCCCGGAACCGGCAAGACGTCGACTGTGCTCGCT 24413 Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCT 254120 |||| |||| || | | |||| || || ||||| ||||| ||||| Sbjct 24412 TTGGCTAAGGAGCTGTATGGACCCGAGCTTATGAAGGATCGAGTGCTGGAGCTCAACGCG 24353 Query 254121 TCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGA-CTTT-CT-CCAAGATG 254177 || ||||| || || | | |||| || |||| ||||||| |||| || || ||| Sbjct 24352 TCCGACGAGCGAGGTATCGCTATCGTTCGAGACAGCATCAAGAACTTTGCTGCCCAGAAA 24293 Query 254178 TCGATTTCGTCG-----------TTCCAA------CCCGGCTGTCCGCCTTTCAAGCTCG 254220 | || || | | || | ||| || ||||| |||||| || Sbjct 24292 GTGGTTGCGCCCAAAGAGCACATTGCCGAAAAGTACCCT--TGCCCGCCATTCAAGATCA 24235 Query 254221 TGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGA 254280 | || ||||| ||||| || ||||||| | ||||| ||| || || || ||||| | Sbjct 24234 TCATTCTGGATGAGGCCGATTCCATGACCACAGACGCCCAGAGTGCTCTGCGACGAACTA 24175 Query 254281 TGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCA 254340 ||||||| |||||| ||| || ||||| || | |||||||||||| || |||| Sbjct 24174 TGGAGACTTACTCCGCCCAGACCCGATTTTGTCTCATCTGCAACTACGTGACGCGAATCA 24115 Query 254341 TCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCAG 254380 ||| ||||||||| ||||| ||| ||||||| || ||||| Sbjct 24114 TCGACCCGCTGGCGTCTCGATGCTCCAAGTTCCGGTTCAG 24075 >seq24 Length=170883 Score = 114 bits (126), Expect = 3e-20 Identities = 357/551 (65%), Gaps = 9/551 (2%) Strand=Plus/Plus Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952 ||||| ||| | ||||||||| | ||||| || ||| || ||||| | | | || Sbjct 95418 CAGCAGATGATCATGCGAGTGTCCGTCGGAATCCACGGTGACGACATTGCCCGAGCCATC 95477 Query 248953 GAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAAC 249012 ||||| |||| | ||| | | | | || || || | || || |||| |||| Sbjct 95478 GAGACCTACAACTACATGTCTCAGAAGTACTTTACCCACGCTTCCCCCACCCTCTACAAC 95537 Query 249013 GCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCT 249072 || || ||| | | ||| || ||||| || ||| | |||| | |||||||| Sbjct 95538 GCTGGAACCCCCCAGCCCCAGATGTCGTCGTGTTTCCTTGTCAACATGAAGGACGACTCC 95597 Query 249073 GTCGACGGCATTTATGACACGCTTAAACAGACG---GCGAAGATTTCTAAATTCGCGGGC 249129 |||||||||| || || || || || ||| || |||||| || | || ||| Sbjct 95598 ATCGACGGCATCTACGATACCCTCAA---GACCTGTGCTCTGATTTCCAAGTCTGCTGGC 95654 Query 249130 GGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAAT 249189 || |||||||||||| || |||||||||||| | || || ||||| || || || Sbjct 95655 GGTATCGGTCTCTCCATCCACAACATCCGAGCCACCGGCTCCTACATTGCCGGCACCAAC 95714 Query 249190 GGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATC 249249 || | | |||||||| ||| | || || || | ||| ||| | | | | Sbjct 95715 GGAACCTCCAACGGTATCGTGCCCATGCTGCGTGTCTACAACAACACTGCCCGATACGTG 95774 Query 249250 AACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCC 249306 |||||| || | ||| || | || |||||||| | || ||||||| | Sbjct 95775 GACCAGGGAGGCAACAAGCGACCCGGAGCCTTTGCCATGTACCTTGAGCCCTGGCACGAC 95834 Query 249307 GATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGT 249366 || || || |||||| || || ||||||| |||| || ||| || |||| || Sbjct 95835 GACATCTTCGAGTTCTGCGAGCTGCGAAAGAACCACGGAAAGGAGGAGATTCGAGCCCGA 95894 Query 249367 GACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGC 249426 ||||| ||| | ||||||| || |||| |||||||| || ||| || ||| | Sbjct 95895 GACCTGTTCCTGGCCCTGTGGATCCCCGATCTGTTCATGGAGCGAGTCGAGCAGAACGCC 95954 Query 249427 GATTGGACGCT 249437 || ||||| || Sbjct 95955 GAGTGGACTCT 95965 Score = 98.7 bits (108), Expect = 2e-15 Identities = 165/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 249864 GTCCAACATGAAGCACCGTCCATGTGGGCTGGGCGTTCAGGCACTGCACGACGTCTACAT 249923 |||||||||| || || || || ||||| ||||||| ||| |||| || ||| Sbjct 96404 GTCCAACATGCGACATCGACCTATTGCTCTGGGTGTTCAGGGTCTGGCCGACACCTTCAT 96463 Query 249924 GGTGATGGGATTCCCCTTCGAGTCAGAGGAGGCAGCGACGCTAAATAAACAGATTTTCGA 249983 || || || | ||||| ||||| | ||||| || ||| || | ||||| ||||| Sbjct 96464 GGCTCTGCGACTTCCCTTTGAGTCTGCCGAGGCCAAGAAGCTCAACATCCAGATCTTCGA 96523 Query 249984 GACCATCTATCACGGGAGCGTCGAGGCGTCCATCGAAAGGGC-CAAGATCGACGGACCAT 250042 ||||||||| ||||| ||||||||| || ||| | ||| | || ||||| | | Sbjct 96524 GACCATCTACCACGGAGCCGTCGAGGCCTCTTACGAGATGGCTCTTGA-GGACGGTGCCT 96582 Query 250043 ACGAGAGTTTTCAGGGGTCGCCCGCGTCGTTCGGGAAGCTTCAGTTTGATCTTTGG 250098 |||||| || ||||| || || || || || | ||||||||||| || ||| Sbjct 96583 ACGAGACCTTCCAGGGCTCTCCTGCCTCCAGGGGAGACCTTCAGTTTGACCTGTGG 96638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073765794664192