Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01]
44 sequences; 20,877,144 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq26 138 2e-27
seq24 114 3e-20
>seq26
Length=35697
Score = 138 bits (152), Expect = 2e-27
Identities = 272/400 (68%), Gaps = 22/400 (6%)
Strand=Plus/Minus
Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060
|| || ||| |||| ||| |||| ||||||||||| ||||||||||| || | || ||
Sbjct 24472 CTGCCACATATGCTCTTCTACGGGCCTCCCGGAACCGGCAAGACGTCGACTGTGCTCGCT 24413
Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCT 254120
|||| |||| || | | |||| || || ||||| ||||| |||||
Sbjct 24412 TTGGCTAAGGAGCTGTATGGACCCGAGCTTATGAAGGATCGAGTGCTGGAGCTCAACGCG 24353
Query 254121 TCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGA-CTTT-CT-CCAAGATG 254177
|| ||||| || || | | |||| || |||| ||||||| |||| || || |||
Sbjct 24352 TCCGACGAGCGAGGTATCGCTATCGTTCGAGACAGCATCAAGAACTTTGCTGCCCAGAAA 24293
Query 254178 TCGATTTCGTCG-----------TTCCAA------CCCGGCTGTCCGCCTTTCAAGCTCG 254220
| || || | | || | ||| || ||||| |||||| ||
Sbjct 24292 GTGGTTGCGCCCAAAGAGCACATTGCCGAAAAGTACCCT--TGCCCGCCATTCAAGATCA 24235
Query 254221 TGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGA 254280
| || ||||| ||||| || ||||||| | ||||| ||| || || || ||||| |
Sbjct 24234 TCATTCTGGATGAGGCCGATTCCATGACCACAGACGCCCAGAGTGCTCTGCGACGAACTA 24175
Query 254281 TGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCA 254340
||||||| |||||| ||| || ||||| || | |||||||||||| || ||||
Sbjct 24174 TGGAGACTTACTCCGCCCAGACCCGATTTTGTCTCATCTGCAACTACGTGACGCGAATCA 24115
Query 254341 TCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCAG 254380
||| ||||||||| ||||| ||| ||||||| || |||||
Sbjct 24114 TCGACCCGCTGGCGTCTCGATGCTCCAAGTTCCGGTTCAG 24075
>seq24
Length=170883
Score = 114 bits (126), Expect = 3e-20
Identities = 357/551 (65%), Gaps = 9/551 (2%)
Strand=Plus/Plus
Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952
||||| ||| | ||||||||| | ||||| || ||| || ||||| | | | ||
Sbjct 95418 CAGCAGATGATCATGCGAGTGTCCGTCGGAATCCACGGTGACGACATTGCCCGAGCCATC 95477
Query 248953 GAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAAC 249012
||||| |||| | ||| | | | | || || || | || || |||| ||||
Sbjct 95478 GAGACCTACAACTACATGTCTCAGAAGTACTTTACCCACGCTTCCCCCACCCTCTACAAC 95537
Query 249013 GCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCT 249072
|| || ||| | | ||| || ||||| || ||| | |||| | ||||||||
Sbjct 95538 GCTGGAACCCCCCAGCCCCAGATGTCGTCGTGTTTCCTTGTCAACATGAAGGACGACTCC 95597
Query 249073 GTCGACGGCATTTATGACACGCTTAAACAGACG---GCGAAGATTTCTAAATTCGCGGGC 249129
|||||||||| || || || || || ||| || |||||| || | || |||
Sbjct 95598 ATCGACGGCATCTACGATACCCTCAA---GACCTGTGCTCTGATTTCCAAGTCTGCTGGC 95654
Query 249130 GGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAAT 249189
|| |||||||||||| || |||||||||||| | || || ||||| || || ||
Sbjct 95655 GGTATCGGTCTCTCCATCCACAACATCCGAGCCACCGGCTCCTACATTGCCGGCACCAAC 95714
Query 249190 GGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATC 249249
|| | | |||||||| ||| | || || || | ||| ||| | | | |
Sbjct 95715 GGAACCTCCAACGGTATCGTGCCCATGCTGCGTGTCTACAACAACACTGCCCGATACGTG 95774
Query 249250 AACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCC 249306
|||||| || | ||| || | || |||||||| | || ||||||| |
Sbjct 95775 GACCAGGGAGGCAACAAGCGACCCGGAGCCTTTGCCATGTACCTTGAGCCCTGGCACGAC 95834
Query 249307 GATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGT 249366
|| || || |||||| || || ||||||| |||| || ||| || |||| ||
Sbjct 95835 GACATCTTCGAGTTCTGCGAGCTGCGAAAGAACCACGGAAAGGAGGAGATTCGAGCCCGA 95894
Query 249367 GACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGC 249426
||||| ||| | ||||||| || |||| |||||||| || ||| || ||| |
Sbjct 95895 GACCTGTTCCTGGCCCTGTGGATCCCCGATCTGTTCATGGAGCGAGTCGAGCAGAACGCC 95954
Query 249427 GATTGGACGCT 249437
|| ||||| ||
Sbjct 95955 GAGTGGACTCT 95965
Score = 98.7 bits (108), Expect = 2e-15
Identities = 165/236 (70%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 249864 GTCCAACATGAAGCACCGTCCATGTGGGCTGGGCGTTCAGGCACTGCACGACGTCTACAT 249923
|||||||||| || || || || ||||| ||||||| ||| |||| || |||
Sbjct 96404 GTCCAACATGCGACATCGACCTATTGCTCTGGGTGTTCAGGGTCTGGCCGACACCTTCAT 96463
Query 249924 GGTGATGGGATTCCCCTTCGAGTCAGAGGAGGCAGCGACGCTAAATAAACAGATTTTCGA 249983
|| || || | ||||| ||||| | ||||| || ||| || | ||||| |||||
Sbjct 96464 GGCTCTGCGACTTCCCTTTGAGTCTGCCGAGGCCAAGAAGCTCAACATCCAGATCTTCGA 96523
Query 249984 GACCATCTATCACGGGAGCGTCGAGGCGTCCATCGAAAGGGC-CAAGATCGACGGACCAT 250042
||||||||| ||||| ||||||||| || ||| | ||| | || ||||| | |
Sbjct 96524 GACCATCTACCACGGAGCCGTCGAGGCCTCTTACGAGATGGCTCTTGA-GGACGGTGCCT 96582
Query 250043 ACGAGAGTTTTCAGGGGTCGCCCGCGTCGTTCGGGAAGCTTCAGTTTGATCTTTGG 250098
|||||| || ||||| || || || || || | ||||||||||| || |||
Sbjct 96583 ACGAGACCTTCCAGGGCTCTCCTGCCTCCAGGGGAGACCTTCAGTTTGACCTGTGG 96638
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073765794664192
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |