Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq4 91.5 1e-13 seq14 89.7 4e-13 >seq4 Length=1325655 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 || || ||| ||||||||| ||||||||||| || || |||| || || || Sbjct 386788 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCGTCCTCGAGCTGC 386729 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || |||||||| || | ||||| ||||| || || | |||||||||||| || || Sbjct 386728 TTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTG 386669 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | |||| | ||||||||| | ||| || ||||| || || Sbjct 386668 GACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCGGTA 386609 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| ||||| Sbjct 386608 AGGGTCTTGACAAAGATCTGCAT 386586 >seq14 Length=605277 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || || ||| ||||||||| ||||||||||| || || |||| || Sbjct 299727 ACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCGTCCTCA 299786 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| || || |||| ||||| ||||| || || | |||||||||||| | Sbjct 299787 AGCTGCTTTCCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGA 299846 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| ||| ||||| | || || ||||| Sbjct 299847 ATCTTAGACTTGACATTGTCAATGGTGTCGGAGGACTCAACCTCGAGAGTGATGGTCTTT 299906 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| ||||| |||||||| ||||| Sbjct 299907 CCAGTCAGGGTCTTGACAAAGATCTGCAT 299935 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| | || | || | ||| || ||| |||||||| |||||||||||| Sbjct 298762 GCCACCTCGGAGTCGGAGCACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGA 298821 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| |||| ||||| || || |||||||| || | ||||| ||||| || || Sbjct 298822 AAGGGTTCGACCGTCCTCCAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGG 298881 Query 45229 CACACCCTCCTTGTCCGCAATTTT 45252 | ||||||||||||| ||| || Sbjct 298882 GATACCCTCCTTGTCCTGAATCTT 298905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074988140924