Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3 192 8e-44 >seq3 Length=1361780 Score = 192 bits (212), Expect = 8e-44 Identities = 400/592 (68%), Gaps = 8/592 (1%) Strand=Plus/Minus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 || ||| || || ||| ||| ||||||||||||| | ||| | |||||||| || || Sbjct 14921 CAGACAGGCAAAGTCGGTGTGCAGACCCTCGTCTCGAGAAATGAGCTCGTTGGAGAAGGT 14862 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 36273 ||| |||||||| || || ||||| || ||||| || ||||| || || || || || || Sbjct 14861 GAGGCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCTGAGAA 14802 Query 36274 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT----GT 36329 || || || || || || ||||||||||| || | ||| ||| || | ||| || Sbjct 14801 AAAGATACCCTCGACGGCGGCAAAGGCAATGAGCCGCTCGCCA-AAGGTGGACTCCTCGT 14743 Query 36330 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 36389 | |||||||| ||||||| ||||||||||| || | || || || ||||| || | Sbjct 14742 CGGAAATCCACTTGAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGG 14683 Query 36390 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 36449 | || || || |||||| || || || || | ||||| || || | || | Sbjct 14682 CGTTGAACAGGTAGTTTCGCTCCTTGGGGTCCTTGATGTATGTGTCGATGAGCAGCGAGT 14623 Query 36450 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 36509 | ||||||| || ||||| || || || || || |||||||| || | ||||||| Sbjct 14622 AGGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGG 14563 Query 36510 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 36569 | ||| || || | ||||| || | | || || || || |||||||| || Sbjct 14562 GAGCCTGGACCTCGCCGGAGAATCGCTCCACCAGGTTCTCGTTGACGATTCCGTCGGAGG 14503 Query 36570 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--TTGGTG-TTAGTTTAT 36626 | ||||| || |||| || || || || || |||| ||| || | | || | Sbjct 14502 CAGCAAAGAAGGCCAGAACGTGAGAGATGAAGAATCGCTCGTCGTTGTTGAGTCGGTTCT 14443 Query 36627 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 36686 ||| || || || || | ||| | || || | ||||| || || ||||| | Sbjct 14442 CCCAGTCGCCCATGTCCTTGCCGAGATCGATCTCCTCAGCAGTCCAGAAGGAAGCCTCAG 14383 Query 36687 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 |||| || ||||| | |||||| ||||| || || || || || | ||||| Sbjct 14382 CCTTCTTGTACATCTGCCAGATCTCATGGTACTGGATGGGGAAGAGCACAAA 14331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172438004960