Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01]
44 sequences; 20,877,144 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq3 306 5e-78
seq10 136 6e-27
seq24 120 5e-22
>seq3
Length=1361780
Score = 306 bits (338), Expect = 5e-78
Identities = 603/883 (68%), Gaps = 53/883 (6%)
Strand=Plus/Plus
Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054
|| || |||||| ||| ||||| || ||| | |||||||| |||||| |||| |||||
Sbjct 14337 CTCTTCCCCATCCAGTACCATGAGATCTGGCAGATGTACAAGAAGGCTGAGGCTTCCTTC 14396
Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114
||||| | || ||| ||||||| ||||||| || ||| ||||||| || |||
Sbjct 14397 TGGACTGCTGAGGAGATCGATCTCGGCAAGGACATGGGCGACTGGGAGAACCG----ACT 14452
Query 125115 GAA--ACT--GAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGG 125170
|| || |||||| || || || ||| || ||||||||||||| | |||||| ||
Sbjct 14453 CAACAACGACGAGCGATTCTTCATCTCTCACGTTCTGGCCTTCTTTGCTGCCTCCGACGG 14512
Query 125171 AATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCAT--TCCAGAGGTG 125228
|||||||||||| || ||| || |||||||| ||| | ||| ||| ||||
Sbjct 14513 AATCGTCAACGAGAACCTGGTGGAGCGATTCTCCGGCGAGGT--CCAGGCTCCCGAGGCC 14570
Query 125229 TCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACA 125288
|||||| ||||| ||||| |||||||| |||||| | |||||||||| |||||
Sbjct 14571 AAGTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCGGAAACCTACTCGCTG 14630
Query 125289 CTGATTGACATGTACATTCGCGATCC---GCAACGTAAACACATGCTCTTTAACGCAATC 125345
|| || |||| ||||| || || | | || || || || || ||||| |||
Sbjct 14631 CTCATCGACACATACATCAAGGACCCCAAGGAGCGAAACTACCTGTTC---AACGCCATC 14687
Query 125346 GACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGAC 125405
|| || | || | || || ||||| | |||| | |||||| |||||
Sbjct 14688 GAGACCATCCCCTGCATCAAGAAGAAGGCCGACTGGGCTCTCAAGTGGATTTCCGACGAG 14747
Query 125406 AAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465
|||| | | | ||| | || | || || |||||||| ||||| ||||| || ||
Sbjct 14748 GAGTCCACCTTTGGCGAGCGGCTCATTGCCTTTGCCGCCGTCGAGGGTATCTTTTTCTCA 14807
Query 125466 GGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCAC 125525
|| ||| || ||||||| |||||||||||||| || ||||||||||| || || |
Sbjct 14808 GGCTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTCACCTTC 14867
Query 125526 AGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT- 125584
|||||| | || |||||||||||||| || ||| ||||||||| ||| || ||
Sbjct 14868 TCCAACGAGCTCATTTCTCGAGACGAGGGTCTGCACACCGACTTTGCCTGTCTGCTCTTC 14927
Query 125585 TCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTC---ATCAACATTGT 125641
|| || || |||| | || || | | | | ||| | ||||||
Sbjct 14928 TCTCACCT----------CGAGAACCGACCCTCCAAGAAGATTGTCGAGGACGTCATTGT 14977
Query 125642 AACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACC----GGTCAGCA 125697
||| || || | || || || ||||| || ||||| | || || ||||
Sbjct 14978 ---CGAGGCTGTTGGCATCGAGCAGGAGTTCCTGACCGACGCTCTGCCCTGTGGTC---- 15030
Query 125698 TGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTAC 125757
|| | ||||||||| |||||| |||||| ||||||| |||||||| || || || || |
Sbjct 15031 TGCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGACTGC 15090
Query 125758 TGTACGAGTTGAT-TGG----CCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCAT 125812
|| |||| | | | | |||| | |||||| ||| || ||||| || |||||
Sbjct 15091 TG-----GTTGCTCTCGGCAACACCAAGGTCTACAACTCCACCAACCCCTTCGACTTCAT 15145
Query 125813 GACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855
| | ||| || || | |||||||||||||| |||||||||
Sbjct 15146 GGAGAACATCTCTCTGGCCGGTAAGACCAACTTCTTCGAGAAG 15188
>seq10
Length=1040050
Score = 136 bits (150), Expect = 6e-27
Identities = 393/594 (66%), Gaps = 28/594 (5%)
Strand=Plus/Minus
Query 69885 ACAACAACCTACCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAGC 69944
|| ||| || || |||||||| || || |||||| | |||||| | |||||||
Sbjct 847003 ACGACATTCTCCCCCTGTTGACCACAAAACGGGTCTTTTACCGGGGCGTGTTGGAGGAGC 846944
Query 69945 TCTTGTGGATGATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGAAAGGGTGTACACA 70004
| |||||| | | |||| | || | | ||| | |||||| || | ||||
Sbjct 846943 TTTTGTGGTTTGTGGCCGGGTGCACTGACGGCAAGAAACTGAGCGAGAAAAACATTCACA 846884
Query 70005 TTTGGAGCGGCAACAGTAGTCGAAGCGTTT-TGGATTCGCTCGGCTTCACCGACAGACAA 70063
| ||| |||||| | | | | | |||| |||| | ||| | | || ||| |
Sbjct 846883 TCTGGGACGGCAATGG-ATCCAAGGAGTTTCTGGAAAAGGCCGGACTGGGCCACCGACGA 846825
Query 70064 GAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTA 70123
|| ||||||||||| || || ||||| || || ||| | || | || | ||||
Sbjct 846824 GAAGGCGATCTGGGACCCGTCTACGGCTTTCAATGGCGCCATTTCGGAGCAGAGTACAAG 846765
Query 70124 GACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACA-ATCATTGACAC 70182
|||||||| |||||||| |||| ||||| || ||||| || | ||| | ||| ||||
Sbjct 846764 GACTGCGACACAGACTACACGGGCCAGGGCGTGGATCAGCTG-AAACAGGTGATTCACAC 846706
Query 70183 TCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTT 70242
|||||| ||||| || || | | ||| | ||| ||||||| ||||| ||| |
Sbjct 846705 TCTCAAAACCAACCCTCAGGACCGCCGAATCATTCTGTCGGCATGGAACCCTGCGGATCT 846646
Query 70243 GCACCAA-ATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC---TCGTACGA- 70296
| |||| ||||| || || || || ||| |||| | |||||| ||| |||||| |
Sbjct 846645 -CTCCAAGATGGCTCTGCCTCCCTGCCACATGTTCTG-TCAGTTCTACGTGTCGTACAAG 846588
Query 70297 --------------TGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGC 70342
||| || |||| ||| |||| ||| || ||| ||||
Sbjct 846587 AAGAACAAGAACCGCGGCCAACTGTCGTGCCAGCTGTACCAGCGGTCCTGTGACCTGGGA 846528
Query 70343 CTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATT 70402
|| || || ||||| |||||||| || || ||||||||| |||||||| || |
Sbjct 846527 CTGGGGGTGCCCTTCAACATTGCCTCGTACGCTCTGTTGACGCGGATGATTGCGCAGGTG 846468
Query 70403 ACCGGCCT-GAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTA 70455
|| | || || ||| |||| |||| |||||||| |||||||| ||||||||
Sbjct 846467 ACGGATCTGGACTGCG-GCGAGCTCGTCCACACCATGGGCGACGCGCACGTGTA 846415
>seq24
Length=170883
Score = 120 bits (132), Expect = 5e-22
Identities = 380/578 (66%), Gaps = 12/578 (2%)
Strand=Plus/Plus
Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865
|| ||||| | | ||| || | ||||| ||||| | | ||||| || || | ||
Sbjct 95709 ACCAACGGAACCTCCAACGGTATCGTGCCCATGCTGCGTGTCTACAACAACACTGCC-CG 95767
Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925
|||||| ||||| ||||| || || || || || | ||| | ||| | || || ||
Sbjct 95768 ATACGTGGACCAGGGAGGCAACAAGCGACCCGGAGCCTTTGCCATGTACCTTGAGCCCTG 95827
Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985
||||| ||| | || || || |||| |||| || ||| || || ||| ||
Sbjct 95828 GCACGACGACATCTTCGAGTTCTGCGAGCTGCGAAAGAACCACGGAAAGGAGGAGATTCG 95887
Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045
|||| | ||| |||| || || ||| | || ||| |||||||| |||| ||| | |
Sbjct 95888 AGCCCGAGACCTGTTCCTGGCCCTGTGGATCCCCGATCTGTTCATGGAGCGAGTCGAGCA 95947
Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105
| | | |||| || ||||||||| || || ||||||||| ||| || ||
Sbjct 95948 GAACGCCGAGTGGACTCTCATGTGCCCCAACGAGTGTCCCGGTCTGGACGACGTCTACGG 96007
Query 97106 CGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGT 97165
||| ||||| || |||| | |||||| | ||||||||| || |||||
Sbjct 96008 CGACGAGTTCAAGCAGCTGTACGAGCAGTACGAGAAGGAGGGCCGAG--GTC-GACGAAC 96064
Query 97166 CGATGCACG---AGAA-CTGTGGAAGGCCATCGT-GACGGCTCAGGTAGAGACTGGAACT 97220
| || | || |||| |||||| | ||| | ||| || ||| ||| | || |
Sbjct 96065 C-ATCCCCGCCCAGAAGCTGTGGTACCACATTCTCGACTGC-CAGACCGAGTCCGGTAAC 96122
Query 97221 CCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACC 97280
|| | ||| |||||||||||| | || || || |||||| || | || |||
Sbjct 96123 CCCTTCATGCTCTACAAGGATGCTTGCAACCGAAAGTCCAACCAGAAGAACCTCGGAACC 96182
Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCA 97340
|||||| ||||| |||||| || ||||| |||||| | ||||| || ||| |||
Sbjct 96183 ATCAAGTCTTCCAACCTGTGCTGCGAGATTGTCGAGTACTCTTCTCCCGATGAGGTGGCT 96242
Query 97341 GTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGT 97378
|||||| ||||| || | ||||||| |||||
Sbjct 96243 GTTTGCAACCTGGCCTCCATTGCCCTGCCCACCTTTGT 96280
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741058792417440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |