Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3 306 5e-78 seq10 136 6e-27 seq24 120 5e-22 >seq3 Length=1361780 Score = 306 bits (338), Expect = 5e-78 Identities = 603/883 (68%), Gaps = 53/883 (6%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 || || |||||| ||| ||||| || ||| | |||||||| |||||| |||| ||||| Sbjct 14337 CTCTTCCCCATCCAGTACCATGAGATCTGGCAGATGTACAAGAAGGCTGAGGCTTCCTTC 14396 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||| | || ||| ||||||| ||||||| || ||| ||||||| || ||| Sbjct 14397 TGGACTGCTGAGGAGATCGATCTCGGCAAGGACATGGGCGACTGGGAGAACCG----ACT 14452 Query 125115 GAA--ACT--GAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGG 125170 || || |||||| || || || ||| || ||||||||||||| | |||||| || Sbjct 14453 CAACAACGACGAGCGATTCTTCATCTCTCACGTTCTGGCCTTCTTTGCTGCCTCCGACGG 14512 Query 125171 AATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCAT--TCCAGAGGTG 125228 |||||||||||| || ||| || |||||||| ||| | ||| ||| |||| Sbjct 14513 AATCGTCAACGAGAACCTGGTGGAGCGATTCTCCGGCGAGGT--CCAGGCTCCCGAGGCC 14570 Query 125229 TCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACA 125288 |||||| ||||| ||||| |||||||| |||||| | |||||||||| ||||| Sbjct 14571 AAGTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCGGAAACCTACTCGCTG 14630 Query 125289 CTGATTGACATGTACATTCGCGATCC---GCAACGTAAACACATGCTCTTTAACGCAATC 125345 || || |||| ||||| || || | | || || || || || ||||| ||| Sbjct 14631 CTCATCGACACATACATCAAGGACCCCAAGGAGCGAAACTACCTGTTC---AACGCCATC 14687 Query 125346 GACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGAC 125405 || || | || | || || ||||| | |||| | |||||| ||||| Sbjct 14688 GAGACCATCCCCTGCATCAAGAAGAAGGCCGACTGGGCTCTCAAGTGGATTTCCGACGAG 14747 Query 125406 AAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 |||| | | | ||| | || | || || |||||||| ||||| ||||| || || Sbjct 14748 GAGTCCACCTTTGGCGAGCGGCTCATTGCCTTTGCCGCCGTCGAGGGTATCTTTTTCTCA 14807 Query 125466 GGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCAC 125525 || ||| || ||||||| |||||||||||||| || ||||||||||| || || | Sbjct 14808 GGCTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTCACCTTC 14867 Query 125526 AGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT- 125584 |||||| | || |||||||||||||| || ||| ||||||||| ||| || || Sbjct 14868 TCCAACGAGCTCATTTCTCGAGACGAGGGTCTGCACACCGACTTTGCCTGTCTGCTCTTC 14927 Query 125585 TCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTC---ATCAACATTGT 125641 || || || |||| | || || | | | | ||| | |||||| Sbjct 14928 TCTCACCT----------CGAGAACCGACCCTCCAAGAAGATTGTCGAGGACGTCATTGT 14977 Query 125642 AACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACC----GGTCAGCA 125697 ||| || || | || || || ||||| || ||||| | || || |||| Sbjct 14978 ---CGAGGCTGTTGGCATCGAGCAGGAGTTCCTGACCGACGCTCTGCCCTGTGGTC---- 15030 Query 125698 TGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTAC 125757 || | ||||||||| |||||| |||||| ||||||| |||||||| || || || || | Sbjct 15031 TGCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGACTGC 15090 Query 125758 TGTACGAGTTGAT-TGG----CCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCAT 125812 || |||| | | | | |||| | |||||| ||| || ||||| || ||||| Sbjct 15091 TG-----GTTGCTCTCGGCAACACCAAGGTCTACAACTCCACCAACCCCTTCGACTTCAT 15145 Query 125813 GACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 | | ||| || || | |||||||||||||| ||||||||| Sbjct 15146 GGAGAACATCTCTCTGGCCGGTAAGACCAACTTCTTCGAGAAG 15188 >seq10 Length=1040050 Score = 136 bits (150), Expect = 6e-27 Identities = 393/594 (66%), Gaps = 28/594 (5%) Strand=Plus/Minus Query 69885 ACAACAACCTACCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAGC 69944 || ||| || || |||||||| || || |||||| | |||||| | ||||||| Sbjct 847003 ACGACATTCTCCCCCTGTTGACCACAAAACGGGTCTTTTACCGGGGCGTGTTGGAGGAGC 846944 Query 69945 TCTTGTGGATGATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGAAAGGGTGTACACA 70004 | |||||| | | |||| | || | | ||| | |||||| || | |||| Sbjct 846943 TTTTGTGGTTTGTGGCCGGGTGCACTGACGGCAAGAAACTGAGCGAGAAAAACATTCACA 846884 Query 70005 TTTGGAGCGGCAACAGTAGTCGAAGCGTTT-TGGATTCGCTCGGCTTCACCGACAGACAA 70063 | ||| |||||| | | | | | |||| |||| | ||| | | || ||| | Sbjct 846883 TCTGGGACGGCAATGG-ATCCAAGGAGTTTCTGGAAAAGGCCGGACTGGGCCACCGACGA 846825 Query 70064 GAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTA 70123 || ||||||||||| || || ||||| || || ||| | || | || | |||| Sbjct 846824 GAAGGCGATCTGGGACCCGTCTACGGCTTTCAATGGCGCCATTTCGGAGCAGAGTACAAG 846765 Query 70124 GACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACA-ATCATTGACAC 70182 |||||||| |||||||| |||| ||||| || ||||| || | ||| | ||| |||| Sbjct 846764 GACTGCGACACAGACTACACGGGCCAGGGCGTGGATCAGCTG-AAACAGGTGATTCACAC 846706 Query 70183 TCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTT 70242 |||||| ||||| || || | | ||| | ||| ||||||| ||||| ||| | Sbjct 846705 TCTCAAAACCAACCCTCAGGACCGCCGAATCATTCTGTCGGCATGGAACCCTGCGGATCT 846646 Query 70243 GCACCAA-ATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC---TCGTACGA- 70296 | |||| ||||| || || || || ||| |||| | |||||| ||| |||||| | Sbjct 846645 -CTCCAAGATGGCTCTGCCTCCCTGCCACATGTTCTG-TCAGTTCTACGTGTCGTACAAG 846588 Query 70297 --------------TGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGC 70342 ||| || |||| ||| |||| ||| || ||| |||| Sbjct 846587 AAGAACAAGAACCGCGGCCAACTGTCGTGCCAGCTGTACCAGCGGTCCTGTGACCTGGGA 846528 Query 70343 CTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATT 70402 || || || ||||| |||||||| || || ||||||||| |||||||| || | Sbjct 846527 CTGGGGGTGCCCTTCAACATTGCCTCGTACGCTCTGTTGACGCGGATGATTGCGCAGGTG 846468 Query 70403 ACCGGCCT-GAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTA 70455 || | || || ||| |||| |||| |||||||| |||||||| |||||||| Sbjct 846467 ACGGATCTGGACTGCG-GCGAGCTCGTCCACACCATGGGCGACGCGCACGTGTA 846415 >seq24 Length=170883 Score = 120 bits (132), Expect = 5e-22 Identities = 380/578 (66%), Gaps = 12/578 (2%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 || ||||| | | ||| || | ||||| ||||| | | ||||| || || | || Sbjct 95709 ACCAACGGAACCTCCAACGGTATCGTGCCCATGCTGCGTGTCTACAACAACACTGCC-CG 95767 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 |||||| ||||| ||||| || || || || || | ||| | ||| | || || || Sbjct 95768 ATACGTGGACCAGGGAGGCAACAAGCGACCCGGAGCCTTTGCCATGTACCTTGAGCCCTG 95827 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 ||||| ||| | || || || |||| |||| || ||| || || ||| || Sbjct 95828 GCACGACGACATCTTCGAGTTCTGCGAGCTGCGAAAGAACCACGGAAAGGAGGAGATTCG 95887 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045 |||| | ||| |||| || || ||| | || ||| |||||||| |||| ||| | | Sbjct 95888 AGCCCGAGACCTGTTCCTGGCCCTGTGGATCCCCGATCTGTTCATGGAGCGAGTCGAGCA 95947 Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105 | | | |||| || ||||||||| || || ||||||||| ||| || || Sbjct 95948 GAACGCCGAGTGGACTCTCATGTGCCCCAACGAGTGTCCCGGTCTGGACGACGTCTACGG 96007 Query 97106 CGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGT 97165 ||| ||||| || |||| | |||||| | ||||||||| || ||||| Sbjct 96008 CGACGAGTTCAAGCAGCTGTACGAGCAGTACGAGAAGGAGGGCCGAG--GTC-GACGAAC 96064 Query 97166 CGATGCACG---AGAA-CTGTGGAAGGCCATCGT-GACGGCTCAGGTAGAGACTGGAACT 97220 | || | || |||| |||||| | ||| | ||| || ||| ||| | || | Sbjct 96065 C-ATCCCCGCCCAGAAGCTGTGGTACCACATTCTCGACTGC-CAGACCGAGTCCGGTAAC 96122 Query 97221 CCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACC 97280 || | ||| |||||||||||| | || || || |||||| || | || ||| Sbjct 96123 CCCTTCATGCTCTACAAGGATGCTTGCAACCGAAAGTCCAACCAGAAGAACCTCGGAACC 96182 Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCA 97340 |||||| ||||| |||||| || ||||| |||||| | ||||| || ||| ||| Sbjct 96183 ATCAAGTCTTCCAACCTGTGCTGCGAGATTGTCGAGTACTCTTCTCCCGATGAGGTGGCT 96242 Query 97341 GTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGT 97378 |||||| ||||| || | ||||||| ||||| Sbjct 96243 GTTTGCAACCTGGCCTCCATTGCCCTGCCCACCTTTGT 96280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058792417440