Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01]
44 sequences; 20,877,144 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq14 140 7e-28
seq4 129 1e-24
>seq14
Length=605277
Score = 140 bits (154), Expect = 7e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || ||||| | || || || ||||| || || |||||||| || |||| |||||
Sbjct 299724 AGAACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCGTCC 299783
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| || || |||||||||||||| || | ||| || || || || ||||| || || |||
Sbjct 299784 TCAAGCTGCTTTCCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCC 299843
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|||||||| | || ||||| || | ||| ||| | || ||||| || || || |||
Sbjct 299844 TGAATCTTAGACTTGACATTGTCAATGGTGTCGGAGGACTCAACCTCGAGAGTGATGGTC 299903
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| ||||| || || || ||||| ||||||||
Sbjct 299904 TTTCCAGTCAGGGTCTTGACAAAGATCTGCAT 299935
Score = 84.2 bits (92), Expect = 5e-11
Identities = 117/164 (71%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| ||||| || || ||||| || || |||| |||||| || || || || ||
Sbjct 298793 GTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGACCGTCCTCCAGCTGCTTACCG 298852
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| || || || || || || || || ||||||||||| | ||
Sbjct 298853 GCGAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGAATCTTGGACTTG 298912
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
|| || || | ||| || || || ||||| || ||||| ||
Sbjct 298913 ACGTTGTCGATGGTGTCAGAAGACTCGACCTCAAGGGTAATGGT 298956
>seq4
Length=1325655
Score = 129 bits (142), Expect = 1e-24
Identities = 157/214 (73%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || ||||| | || || || ||||| || || |||||||| || |||| |||||
Sbjct 386797 AGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCGTCC 386738
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| || || || || || || || || | ||| || || || || ||||| || || |||
Sbjct 386737 TCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCC 386678
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|| ||||| | || || || || | ||| ||| || || ||||| || || ||||||
Sbjct 386677 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTC 386618
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTT 104561
||||| ||||| || || ||||| ||||||||||
Sbjct 386617 TTACCGGTAAGGGTCTTGACAAAGATCTGCATTT 386584
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151397750899152
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |