Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq10 147 3e-31 seq15 140 5e-29 >seq10 Length=1040050 Score = 147 bits (162), Expect = 3e-31 Identities = 196/270 (73%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || || | ||| ||||||||||||||| || || ||||| ||||| || | Sbjct 278916 CGCTAAGCGACACCGAAAGAT-TCTTCGAGATAACATTCAGGGTATCACTAAGCCCGCCA 278858 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| || || || ||||| || ||||| | || | | |||| || |||| Sbjct 278857 TCCGACGTCTCGCGCGACGAGGTGGTGTGAAGCGAATTTCCGCCCAGATCTACGAGGAGA 278798 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| ||||| || | ||||| | |||||| || ||| || | Sbjct 278797 CCCGAAACGTTCTCAAGTCTTTCCTTGAGTCTGTTATTCGAGATGCTGTCACCTACACTG 278738 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||||||||| || | ||| | ||||| || | || || || | Sbjct 278737 AGCACGCCAAGCGAAAGACTGTCACTTCTCTTGATGTTGTCTACGCTCTCAAGCGACAGG 278678 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| | |||| |||||||| |||||| Sbjct 278677 GCCGAACCCTTTACGGTTTTGGTGGTTAAT 278648 >seq15 Length=594222 Score = 140 bits (154), Expect = 5e-29 Identities = 194/269 (72%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || || | ||| | | |||||||||||||| || ||||||||||| || | Sbjct 254087 CGCTAAGCGACACCGAAAGATTT-TGCGAGATAACATCCAGGGTATCACCAAGCCCGCCA 254029 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| || || || || || |||||||| | || | | |||| || |||| Sbjct 254028 TCCGACGTCTTGCGCGACGAGGAGGTGTCAAGCGAATTTCCGCCCAGATCTACGAGGAGA 253969 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| ||||| ||||||| || |||| |||| || || | || || | Sbjct 253968 CCCGAAACGTTCTGAAGTCCTTCCTCGAGTCCGTCATCCGAGACGCCGTTACTTACACTG 253909 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||||||||| || | ||| | ||||| || | || || || | Sbjct 253908 AGCACGCCAAGCGAAAGACTGTCACTTCTCTTGATGTTGTCTACGCCCTTAAGCGACAGG 253849 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | |||| ||||| || ||||| Sbjct 253848 GCCGAACCCTTTACGGTTTCGGTGGTTAA 253820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075159770492