Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3 228 1e-54 >seq3 Length=1361780 Score = 228 bits (252), Expect = 1e-54 Identities = 408/592 (69%), Gaps = 8/592 (1%) Strand=Plus/Minus Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 || ||| || || ||| ||||||||||||||||| | ||| || |||||||| || || Sbjct 14921 CAGACAGGCAAAGTCGGTGTGCAGACCCTCGTCTCGAGAAATGAGCTCGTTGGAGAAGGT 14862 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 ||| |||||||| || || ||||| || ||||| || ||||| ||||| || || || || Sbjct 14861 GAGGCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCTGAGAA 14802 Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTC 33476 ||||| || || || || ||||||||||| || | ||| ||| | || | ||| Sbjct 14801 AAAGATACCCTCGACGGCGGCAAAGGCAATGAGCCGCTCGCCAAAGGTGGACTCCTCGTC 14742 Query 33477 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33536 |||||||| ||||||| ||||||||||| || | || || || || || ||||| Sbjct 14741 GGAAATCCACTTGAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGC 14682 Query 33537 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33596 || || || |||||| || || || || | || || ||||| | || || Sbjct 14681 GTTGAACAGGTAGTTTCGCTCCTTGGGGTCCTTGATGTATGTGTCGATGAGCAGCGAGTA 14622 Query 33597 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33656 ||||||| || ||||| || || ||||| || |||||||| || | ||||||| Sbjct 14621 GGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGG 14562 Query 33657 AATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGC 33716 | ||| || || | ||||| ||| ||| || || || || |||||||| ||| Sbjct 14561 AGCCTGGACCTCGCCGGAGAATCGCTCCACCAGGTTCTCGTTGACGATTCCGTCGGAGGC 14502 Query 33717 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGT---TTAT 33772 ||||| || |||| || || || || || ||||| | |||| ||| || | Sbjct 14501 AGCAAAGAAGGCCAGAACGTGAGAGATGAAGAATCGCTCGTC-GTTGTTGAGTCGGTTCT 14443 Query 33773 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 33832 ||| || || || || | ||| | || || | ||||| || || ||||| | Sbjct 14442 CCCAGTCGCCCATGTCCTTGCCGAGATCGATCTCCTCAGCAGTCCAGAAGGAAGCCTCAG 14383 Query 33833 CCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884 |||| || ||||| | |||||| |||| || ||||| ||||| | ||||| Sbjct 14382 CCTTCTTGTACATCTGCCAGATCTCATGGTACTGGATGGGGAAGAGCACAAA 14331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946857379040