Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01]
44 sequences; 20,877,144 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq14 116 3e-21
seq4 107 2e-18
seq3 102 7e-17
>seq14
Length=605277
Score = 116 bits (128), Expect = 3e-21
Identities = 160/224 (71%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 16712 CCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATG 16771
||||| || | || |||| ||| || ||||||||||| || ||||||||||| | | |
Sbjct 299712 CCTCGGAGTCGGAGAACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGG 299771
Query 16772 GTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACG 16831
||| | ||||||| | || || || ||| |||| || ||||| |||||| || |
Sbjct 299772 GTTCGGCCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATT 299831
Query 16832 CCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCC 16891
||||| ||||| ||| | ||| || | | | | |||||| || ||| ||
Sbjct 299832 CCCTCCTTGTCCTGAATCTTAGACTTGACATTGTCAATGGTGTCGGAGGACTCAACCTCG 299891
Query 16892 ACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| |||||||| ||||| ||||| || |||||||| ||||||||
Sbjct 299892 AGAGTGATGGTCTTTCCAGTCAGGGTCTTGACAAAGATCTGCAT 299935
>seq4
Length=1325655
Score = 107 bits (118), Expect = 2e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| ||||| || | ||| || | ||| || ||||||||||| || ||||||||||| |
Sbjct 386812 CCACCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 386753
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| |||| | ||||||| | || || || || | ||||| ||||| |||||| ||
Sbjct 386752 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 386693
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| ||||| ||||| || | ||| || | | | | |||||| | ||||
Sbjct 386692 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 386633
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTT 16937
|| | |||||| || || ||||| || || |||||||| ||||||||||
Sbjct 386632 TCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAGATCTGCATTT 386584
>seq3
Length=1361780
Score = 102 bits (112), Expect = 7e-17
Identities = 158/226 (70%), Gaps = 0/226 (0%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|||||||| || | ||| |||| ||| || ||||||||||| || ||||||||||| |
Sbjct 557871 CCTCCTCGGAGTCGCAGAACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 557812
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | ||||||| | || ||||| || |||| || ||||| |||||| ||
Sbjct 557811 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGG 557752
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| ||||| ||||| || | ||| || | | | | ||||| || ||||
Sbjct 557751 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACC 557692
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCA 16934
|| | |||||| || || || || || || |||||||| || ||||
Sbjct 557691 TCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 557646
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405087782771560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |