Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq14 116 3e-21 seq4 107 2e-18 seq3 102 7e-17 >seq14 Length=605277 Score = 116 bits (128), Expect = 3e-21 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 16712 CCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATG 16771 ||||| || | || |||| ||| || ||||||||||| || ||||||||||| | | | Sbjct 299712 CCTCGGAGTCGGAGAACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGG 299771 Query 16772 GTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACG 16831 ||| | ||||||| | || || || ||| |||| || ||||| |||||| || | Sbjct 299772 GTTCGGCCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATT 299831 Query 16832 CCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCC 16891 ||||| ||||| ||| | ||| || | | | | |||||| || ||| || Sbjct 299832 CCCTCCTTGTCCTGAATCTTAGACTTGACATTGTCAATGGTGTCGGAGGACTCAACCTCG 299891 Query 16892 ACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | |||||||| ||||| ||||| || |||||||| |||||||| Sbjct 299892 AGAGTGATGGTCTTTCCAGTCAGGGTCTTGACAAAGATCTGCAT 299935 >seq4 Length=1325655 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | ||| || | ||| || ||||||||||| || ||||||||||| | Sbjct 386812 CCACCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 386753 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | ||||||| | || || || || | ||||| ||||| |||||| || Sbjct 386752 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 386693 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| || | ||| || | | | | |||||| | |||| Sbjct 386692 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 386633 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTT 16937 || | |||||| || || ||||| || || |||||||| |||||||||| Sbjct 386632 TCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAGATCTGCATTT 386584 >seq3 Length=1361780 Score = 102 bits (112), Expect = 7e-17 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | ||| |||| ||| || ||||||||||| || ||||||||||| | Sbjct 557871 CCTCCTCGGAGTCGCAGAACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 557812 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| | || ||||| || |||| || ||||| |||||| || Sbjct 557811 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGG 557752 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| || | ||| || | | | | ||||| || |||| Sbjct 557751 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACC 557692 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCA 16934 || | |||||| || || || || || || |||||||| || |||| Sbjct 557691 TCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 557646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405087782771560