Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3 196 6e-45 seq1 129 7e-25 >seq3 Length=1361780 Score = 196 bits (216), Expect = 6e-45 Identities = 401/592 (68%), Gaps = 8/592 (1%) Strand=Plus/Minus Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 || ||| || || ||| ||| ||||||||||||| | ||| | |||||||| || || Sbjct 14921 CAGACAGGCAAAGTCGGTGTGCAGACCCTCGTCTCGAGAAATGAGCTCGTTGGAGAAGGT 14862 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 32776 ||| |||||||| || || ||||| || ||||| || ||||| || || || || || || Sbjct 14861 GAGGCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCTGAGAA 14802 Query 32777 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTC 32833 || || || || || || ||||||||||| || | ||| ||| | || | ||| Sbjct 14801 AAAGATACCCTCGACGGCGGCAAAGGCAATGAGCCGCTCGCCAAAGGTGGACTCCTCGTC 14742 Query 32834 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 |||||||| ||||||| ||||||||||| || | || || || ||||| || || Sbjct 14741 GGAAATCCACTTGAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGC 14682 Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953 || || || |||||| || || || || | ||||| || || | || || Sbjct 14681 GTTGAACAGGTAGTTTCGCTCCTTGGGGTCCTTGATGTATGTGTCGATGAGCAGCGAGTA 14622 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013 ||||||| || ||||| || || || || || ||||||||||| | ||||||| Sbjct 14621 GGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGG 14562 Query 33014 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 33073 | ||| || || | ||||| || | | || || || || |||||||| ||| Sbjct 14561 AGCCTGGACCTCGCCGGAGAATCGCTCCACCAGGTTCTCGTTGACGATTCCGTCGGAGGC 14502 Query 33074 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGT---TTAT 33129 ||||| || |||| || || || || || ||||| | |||| ||| || | Sbjct 14501 AGCAAAGAAGGCCAGAACGTGAGAGATGAAGAATCGCTCGTC-GTTGTTGAGTCGGTTCT 14443 Query 33130 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 33189 ||| || || || || | ||| | || || | ||||| || || ||||| | Sbjct 14442 CCCAGTCGCCCATGTCCTTGCCGAGATCGATCTCCTCAGCAGTCCAGAAGGAAGCCTCAG 14383 Query 33190 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 |||| || ||||| | |||||| ||||| || || || || || | ||||| Sbjct 14382 CCTTCTTGTACATCTGCCAGATCTCATGGTACTGGATGGGGAAGAGCACAAA 14331 >seq1 Length=2434256 Score = 129 bits (142), Expect = 7e-25 Identities = 497/772 (64%), Gaps = 8/772 (1%) Strand=Plus/Plus Query 62747 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 62806 || || || ||||| || ||||| || ||||| | | | || || || | |||||| Sbjct 1213336 GCCACGGAAGCCAGGTTGCAAACAGCCACCTCTTCGGGAGACGAGTACTGGACAATCTCA 1213395 Query 62807 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 62866 ||||| ||||| | |||||||| || | ||| | || || || ||| || Sbjct 1213396 GTGCACAGATTGGACGATTTGATGGTGCCGAGATTCTTCTGGTTGGATTTCGCGTTGCAG 1213455 Query 62867 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCT-ATAATCGCTTT 62925 || ||||| || ||||| || |||||||||||||| | || | | |||||| || Sbjct 1213456 CTGTCTTTATACAGCATGAACGGGCCTCCAGTTTCAATCTG-GCTTGTCAGAATCGCCTT 1213514 Query 62926 CCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATA 62985 | | | | || | ||| || ||||| |||| ||||| | || Sbjct 1213515 GAACAGCTCCTGGGCGTCGATTTGCGAGTTGTACAGCTTTCGAGACTCGTACTCTTCGTA 1213574 Query 62986 CAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACAT 63045 | || ||||| || |||||| | | ||||||| ||| | | ||||| | Sbjct 1213575 CTTGCGGTCGAAATCAGGTCCCCAGATGTCTGCCAGTCCGGGAGCCTTTTTGGGACAGAA 1213634 Query 63046 CAACGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 63104 | |||||| | || | || ||| |||| ||||| || ||||| |||| ||| | | Sbjct 1213635 AAGCGACCATTTCTCGCC-TCTTTCGACTCTCTTCATGAACAGATCGGGAACCCATAATG 1213693 Query 63105 CTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 63164 | ||| ||||| | | ||| | ||||||| ||| || || |||| | || Sbjct 1213694 CGTAAAAGAGATCACGTGCTCTGTTTTCCTCGGCTCCGTGGTTTTTGCGCAGATTCAAGA 1213753 Query 63165 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGT 63224 | ||| |||||| | |||||| || |||||||| | || | ||||||| || |||| Sbjct 1213754 AATCCAAAATATCCGCATGCCATGGCTCCAAGTAGACTGCAAACGCTCCAGGACGCTTGT 1213813 Query 63225 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 63284 | || || || || | |||||| || |||||||| | |||| | ||| |||| ||| | Sbjct 1213814 TGCCGCCTTGGTCCACGTATCTGGCTGTGTTATTGAACACTCGGAGCATGGGAACAATGC 1213873 Query 63285 CATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTG 63344 | |||| | || | | |||| ||| | | || | || | || || || Sbjct 1213874 CTGAGGATTTTCCCTGAGAGCCTGTGATGATGGTGCCCTTAGCTCTGATGTTGTGGATAT 1213933 Query 63345 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC-GTATCATAG 63403 |||||||| || ||||| | || || ||| ||||| |||||| | || || ||| Sbjct 1213934 GCAGACCTATGCCTCCTGCGGTCTTTGAAATTTGGGCGCA-CGTTTTGAGAGTGTCGTAG 1213992 Query 63404 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 63463 ||||| || || || || ||||| | ||||| ||| || | ||| || Sbjct 1213993 ATGCCGTCGATGGAGTCTTCGCTCATGGCGACCAGAAAGCAGGACGATAGCTGGCCCCGG 1214052 Query 63464 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAG 63515 ||| || ||||| || | ||| ||||||||||| || ||| ||||| || Sbjct 1214053 GGAGTGCCTGCATTGAACAGGGTTGGAGAAGCGTGTGTGAAC--TTTTTGAG 1214102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631651502400