Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01]
44 sequences; 20,877,144 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq4 123 2e-23
seq14 116 3e-21
seq3 107 2e-18
seq24 98.7 8e-16
>seq4
Length=1325655
Score = 123 bits (136), Expect = 2e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || || | |||||||| || |||| ||||| ||||| | ||
Sbjct 386586 ATGCAGATCTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 386645
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| | |||| || || || ||||||||||| ||||| || || ||
Sbjct 386646 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAG 386705
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || ||||| || ||||| || ||| | ||||| ||| ||| | || || ||||||
Sbjct 386706 CAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTACAAC 386765
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || || ||||| | ||| | ||| ||||| | || || |||
Sbjct 386766 ATCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCGACTCCGAGGTGGT 386813
>seq14
Length=605277
Score = 116 bits (128), Expect = 3e-21
Identities = 160/224 (71%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || || | || || || || ||||||| || || || || ||
Sbjct 299935 ATGCAGATCTTTGTCAAGACCCTGACTGGAAAGACCATCACTCTCGAGGTTGAGTCCTCC 299876
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| || |||| || ||||| ||||||||||| ||||| || || ||
Sbjct 299875 GACACCATTGACAATGTCAAGTCTAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAG 299816
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || ||||| || || ||| | ||||| ||| ||| |||| || ||||||
Sbjct 299815 CAGCGACTGATTTTTGCTGGAAAGCAGCTTGAGGACGGCCGAACCCTCTCTGACTACAAC 299756
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGG 22442
|| || || || ||||| | ||| | ||| | ||| | || ||
Sbjct 299755 ATCCAGAAGGAGTCCACTCTCCATCTGGTTCTCCGACTCCGAGG 299712
Score = 91.5 bits (100), Expect = 1e-13
Identities = 128/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 22267 GTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATT 22326
|| ||| || ||||||| | ||| | |||| || || || |||||||||||||||
Sbjct 300115 GTCGAATCCTCCGATACTATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATT 300056
Query 22327 CCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTC 22386
|| || || || || || || || || || || || ||| | |||||| || || ||
Sbjct 300055 CCCCCGGACCAGCAGCGACTGATTTTCGCTGGAAAGCAGCTTGAGGATGGTCGAACTCTC 299996
Query 22387 TCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| ||||||||||| || || || || ||| | ||| | ||| | ||| | || || |||
Sbjct 299995 TCTGATTACAACATCCAGAAGGAGTCTACCCTTCATCTGGTTCTCCGACTTCGAGGTGGT 299936
Score = 87.8 bits (96), Expect = 2e-12
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| ||||| |||||||||||||| || || || || || || ||||| || ||||| ||
Sbjct 298905 AAGATTCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGACTTATCTTCGCCGGTAAG 298846
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415
||| | ||||| || ||| | ||||| |||||||| || || ||||||||
Sbjct 298845 CAGCTGGAGGACGGTCGAACCCTTTCCGACTACAACATCCAGAAGGAATCCAC 298793
>seq3
Length=1361780
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 22220 TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCG 22279
||||||| ||||| || || | || || || || |||| || || ||||| || | |
Sbjct 557646 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACTATCACCCTCGAGGTGGAGTCCTCTG 557705
Query 22280 ATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAAC 22339
| ||| | ||| | |||| || || || ||||||||||| || || || || || |
Sbjct 557706 ACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAGC 557765
Query 22340 AACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACA 22399
| || || || || |||||||| ||| | ||||| ||| || | || || |||||||
Sbjct 557766 AGCGACTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTTTCTGACTACAACA 557825
Query 22400 TTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
| || || || ||||| | ||| | ||| ||||| | || ||||||
Sbjct 557826 TCCAGAAGGAGTCCACTCTCCATCTGGTTCTGCGACTCCGAGGAGGT 557872
>seq24
Length=170883
Score = 98.7 bits (108), Expect = 8e-16
Identities = 259/392 (66%), Gaps = 5/392 (1%)
Strand=Plus/Minus
Query 130015 TCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTT 130074
|||||||| | ||| |||| |||||| | ||||||||| |||| ||||| |||
Sbjct 95944 TCGACTCGCTCCATGAACAGATCGGGGATCCACAGGGCCAGGAACAGGTCTCGGGCTCGA 95885
Query 130075 CTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCAC 130134
| ||||| || ||| | ||| || ||| ||| | |||||| |||||||
Sbjct 95884 ATCTCCTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGATGTCGTCGTGCCAG 95825
Query 130135 GGTTCAACATAAATTGCCATTGCGCCCTTCCGTTTG---CCCCCTTGGTCAACGTGGCGC 130191
|| |||| || || || | || || || ||| || || ||||| |||| ||
Sbjct 95824 GGCTCAAGGTACATGGCAAAGGCTCCGGGTCGCTTGTTGCCTCCCTGGTCCACGTATCGG 95765
Query 130192 ACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTC 130251
| | ||||||||||| |||| ||| | | | | ||||||| || ||||| ||||
Sbjct 95764 GCAGTGTTGTTGTAGACACGCAGCATGGGCACGATACCGTTGGAGGTTCCGTTGGTGCCG 95705
Query 130252 TCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAAT 130311
||||| | ||| || || | ||| || | | ||||| || ||||| || |
Sbjct 95704 GCAATGTAGGAGCCGGTGGCTCGGATGTTGTGGATGGAGAGACCGATACCGCCAGCAGAC 95645
Query 130312 TTTGATATCAACGCGCAA-TCGCGTAGCGTTTCATAAATGCCAACGATACTGTCTTCTTT 130370
|| || |||| || || || | || || || || ||||| |||| ||| || ||
Sbjct 95644 TTGGAAATCAGAGCACAGGTCTTG-AGGGTATCGTAGATGCCGTCGATGGAGTCGTCCTT 95586
Query 130371 AATGTTTAGGAGGAAACACGAGGCCAATTGGG 130402
||||| | ||||||||||| | || ||||
Sbjct 95585 CATGTTGACAAGGAAACACGACGACATCTGGG 95554
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419727774920860
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |