Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq4 123 2e-23 seq14 116 3e-21 seq3 107 2e-18 seq24 98.7 8e-16 >seq4 Length=1325655 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | |||||||| || |||| ||||| ||||| | || Sbjct 386586 ATGCAGATCTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 386645 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || || ||||||||||| ||||| || || || Sbjct 386646 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAG 386705 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| || ||||| || ||| | ||||| ||| ||| | || || |||||| Sbjct 386706 CAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTACAAC 386765 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || ||||| | ||| | ||| ||||| | || || ||| Sbjct 386766 ATCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCGACTCCGAGGTGGT 386813 >seq14 Length=605277 Score = 116 bits (128), Expect = 3e-21 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || ||||||| || || || || || Sbjct 299935 ATGCAGATCTTTGTCAAGACCCTGACTGGAAAGACCATCACTCTCGAGGTTGAGTCCTCC 299876 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || ||||| ||||||||||| ||||| || || || Sbjct 299875 GACACCATTGACAATGTCAAGTCTAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAG 299816 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| || || ||| | ||||| ||| ||| |||| || |||||| Sbjct 299815 CAGCGACTGATTTTTGCTGGAAAGCAGCTTGAGGACGGCCGAACCCTCTCTGACTACAAC 299756 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGG 22442 || || || || ||||| | ||| | ||| | ||| | || || Sbjct 299755 ATCCAGAAGGAGTCCACTCTCCATCTGGTTCTCCGACTCCGAGG 299712 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 22267 GTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATT 22326 || ||| || ||||||| | ||| | |||| || || || ||||||||||||||| Sbjct 300115 GTCGAATCCTCCGATACTATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATT 300056 Query 22327 CCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTC 22386 || || || || || || || || || || || || ||| | |||||| || || || Sbjct 300055 CCCCCGGACCAGCAGCGACTGATTTTCGCTGGAAAGCAGCTTGAGGATGGTCGAACTCTC 299996 Query 22387 TCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||||||||| || || || || ||| | ||| | ||| | ||| | || || ||| Sbjct 299995 TCTGATTACAACATCCAGAAGGAGTCTACCCTTCATCTGGTTCTCCGACTTCGAGGTGGT 299936 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| |||||||||||||| || || || || || || ||||| || ||||| || Sbjct 298905 AAGATTCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGACTTATCTTCGCCGGTAAG 298846 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | ||||| || ||| | ||||| |||||||| || || |||||||| Sbjct 298845 CAGCTGGAGGACGGTCGAACCCTTTCCGACTACAACATCCAGAAGGAATCCAC 298793 >seq3 Length=1361780 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22220 TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCG 22279 ||||||| ||||| || || | || || || || |||| || || ||||| || | | Sbjct 557646 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACTATCACCCTCGAGGTGGAGTCCTCTG 557705 Query 22280 ATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAAC 22339 | ||| | ||| | |||| || || || ||||||||||| || || || || || | Sbjct 557706 ACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAGC 557765 Query 22340 AACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACA 22399 | || || || || |||||||| ||| | ||||| ||| || | || || ||||||| Sbjct 557766 AGCGACTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTTTCTGACTACAACA 557825 Query 22400 TTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 | || || || ||||| | ||| | ||| ||||| | || |||||| Sbjct 557826 TCCAGAAGGAGTCCACTCTCCATCTGGTTCTGCGACTCCGAGGAGGT 557872 >seq24 Length=170883 Score = 98.7 bits (108), Expect = 8e-16 Identities = 259/392 (66%), Gaps = 5/392 (1%) Strand=Plus/Minus Query 130015 TCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTT 130074 |||||||| | ||| |||| |||||| | ||||||||| |||| ||||| ||| Sbjct 95944 TCGACTCGCTCCATGAACAGATCGGGGATCCACAGGGCCAGGAACAGGTCTCGGGCTCGA 95885 Query 130075 CTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCAC 130134 | ||||| || ||| | ||| || ||| ||| | |||||| ||||||| Sbjct 95884 ATCTCCTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGATGTCGTCGTGCCAG 95825 Query 130135 GGTTCAACATAAATTGCCATTGCGCCCTTCCGTTTG---CCCCCTTGGTCAACGTGGCGC 130191 || |||| || || || | || || || ||| || || ||||| |||| || Sbjct 95824 GGCTCAAGGTACATGGCAAAGGCTCCGGGTCGCTTGTTGCCTCCCTGGTCCACGTATCGG 95765 Query 130192 ACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTC 130251 | | ||||||||||| |||| ||| | | | | ||||||| || ||||| |||| Sbjct 95764 GCAGTGTTGTTGTAGACACGCAGCATGGGCACGATACCGTTGGAGGTTCCGTTGGTGCCG 95705 Query 130252 TCAATGAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAAT 130311 ||||| | ||| || || | ||| || | | ||||| || ||||| || | Sbjct 95704 GCAATGTAGGAGCCGGTGGCTCGGATGTTGTGGATGGAGAGACCGATACCGCCAGCAGAC 95645 Query 130312 TTTGATATCAACGCGCAA-TCGCGTAGCGTTTCATAAATGCCAACGATACTGTCTTCTTT 130370 || || |||| || || || | || || || || ||||| |||| ||| || || Sbjct 95644 TTGGAAATCAGAGCACAGGTCTTG-AGGGTATCGTAGATGCCGTCGATGGAGTCGTCCTT 95586 Query 130371 AATGTTTAGGAGGAAACACGAGGCCAATTGGG 130402 ||||| | ||||||||||| | || |||| Sbjct 95585 CATGTTGACAAGGAAACACGACGACATCTGGG 95554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727774920860