Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3 167 5e-36 seq8 122 2e-22 seq24 96.9 7e-15 seq2 89.7 1e-12 >seq3 Length=1361780 Score = 167 bits (184), Expect = 5e-36 Identities = 560/859 (65%), Gaps = 22/859 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||| || |||||||||| ||||||||||||||||||||| ||| Sbjct 15184 TCGAAGAAGTTGGTCTTACCGGCCAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 15125 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | ||| || || || | | ||||| || |||||||| | Sbjct 15124 GAGTTGTAGACCTTGGTGTTGCCGAGAGCAACCAGCAGTCGGTCGGCGACAAACTCAATG 15065 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| | ||| || | | ||||||||| | || || ||| || | || || | | Sbjct 15064 TACTGGCACATGAGCTTGGCGTTCATGCCGAGCAGACCACAGGGCAGAGCGTCGGTCAGG 15005 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCAC-CTGTGCCAGAGACAG 251801 || |||| ||| || |||| ||||| | | | ||| || | | | | || | Sbjct 15004 AACTCCTGCTCGATGCCAACAGCCTCGACAATGACGTCCTCGACAATCTTCTTG-GAGGG 14946 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCG 251861 |||||| || | ||| | || || | |||| | ||||||||||||||| || Sbjct 14945 TCGGTTCTCGAGGTGAGAGAAGAGCAGACAGGCAAAGTCGGTGTGCAGACCCTCGTCTCG 14886 Query 251862 ACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAA 251921 | |||| ||||||||| | ||||| ||||| | || || ||| |||||||||| Sbjct 14885 AGAAATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGACCTCGCTTCTTGAGCCAGAA 14826 Query 251922 GATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCG 251981 ||| | | || || || ||||| | | ||||||||| | | |||| || || Sbjct 14825 GATGGAGGCGAAAGAGCCTGAGAAAAAGATACCCTCGACGGCGGCAAAGGCAATGAGCCG 14766 Query 251982 CTCAGCAAA---CGACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTTTCC 252038 ||| |||| |||| || | || | |||| | ||||| | |||||||| Sbjct 14765 CTCGCCAAAGGTGGACTCCTCGTCGGAAATCCACTTGAGAGCCCAGTCGGCCTTCTTCTT 14706 Query 252039 AACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCGAT 252098 | |||||| || ||||| || | || || |||| ||||| ||||| ||| Sbjct 14705 GATGCAGGGGATGGTCTCGATGGCGTTGAACAGGTAGTTTCGCTCCTTGGGGTCCTTGAT 14646 Query 252099 GAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGGTA 252158 | | || | || || ||||| | ||||| |||||| || | | |||||| | Sbjct 14645 GTATGTGTCGATGAGCAGCGAGTAGGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAA 14586 Query 252159 AGCATAGAA----TAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGCAA 252214 | ||||| | | | | ||| || | ||| || ||| || | | | Sbjct 14585 GCCGTAGAAGCACTTGGC-CTCGGGAG---CCTGGACCTCGCCGGAGAATCGCTCCACCA 14530 Query 252215 TGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAGT 252274 |||||| | || || || ||| | | ||||||||| | |||| | ||||||| Sbjct 14529 GGTTCTCGTTGACGATTCCGTCGGAGGCAGCAAAGAAGGCCAGAACGTGAGAGATGAAGA 14470 Query 252275 GACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAG---GAA 252331 ||||| |||| |||||| || ||||||| | ||||||| | | ||| || Sbjct 14469 ATCGCTCGTCGTTGTTGAGTCGGTTCTCCCAGTCGCCCATGTCCT--TGCCGAGATCGAT 14412 Query 252332 CTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCAGGG 252390 | || || | |||||||| | | | | |||||||||||||| ||| | | ||| || Sbjct 14411 C-TCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATCTGC-CAGATCTCATGG 14354 Query 252391 TACTTGATTGGGAA-AGCA 252408 |||| ||| ||||| |||| Sbjct 14353 TACTGGATGGGGAAGAGCA 14335 >seq8 Length=1170456 Score = 122 bits (134), Expect = 2e-22 Identities = 183/257 (71%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 279702 TCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCC 279761 |||||||| || || ||||||||||||||||| || | |||| | || | ||| Sbjct 169485 TCTCTGTCCGGAGGATGGAAGATGAAGCTGGCTCTTGCCACCGCCGTCCTGCGAAAGGCC 169426 Query 279762 GATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTA 279821 ||| |||| |||||||||||||| |||||||| |||| ||| |||||| |||||||| Sbjct 169425 GATATCCTGCTGCTTGATGAGCCCACCAACCATCTGGATACCGTCAACGTTGCCTGGCTG 169366 Query 279822 GTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGC 279881 || |||||| | || ||| | | | | ||| |||| || || || |||||||| Sbjct 169365 GTCAACTACCTCAACA-CCTGTGG--TATCACCTCCATCATCGTGTCCCATGACTCTGGT 169309 Query 279882 TTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAG 279941 ||||| || ||| ||| |||||| ||||| |||| | | ||||| ||| Sbjct 169308 TTCCTCGACAACGTCTGCGAGTACATCATCCACTACGAGCGA---TTTAAGCTGCGAAAG 169252 Query 279942 CACATCGGCAACCTGTC 279958 ||| || |||||||| Sbjct 169251 TACAAGGGTAACCTGTC 169235 Score = 122 bits (134), Expect = 2e-22 Identities = 133/174 (76%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||||||| ||||||| ||||| || || || |||| ||||||||||| ||| Sbjct 169839 GGTGAGGATCTGTGTAACTGTGAGTTCTCTCTTGCTTACGGTGCCAAGATTCTGCTGAAC 169780 Query 279405 TCTACCC-GCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGC 279463 |||| || | || | ||||| ||| || || |||||| |||||||| || || Sbjct 169779 CGAACCCAGCTGCGAC-TTAAGCGAGGCCGACGATACGGTCTCTGTGGTCCCAACGGTGC 169721 Query 279464 GGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCC 279517 |||||| |||||| ||||| |||||||| ||||| ||| | || || || || Sbjct 169720 CGGTAAGTCCACTCTTATGCGAGCCATTGCCAACGGCCAGGTCGAGGGCTTCCC 169667 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 280677 CTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAG 280736 || ||||| || |||||| || |||||||||| || || ||||| || || || ||| Sbjct 168468 CTTGGTCTCGAGCCCGAGCTTGTCTCTCACTCTCGAATCCGAGGTCTGTCCGGTGGACAG 168409 Query 280737 AAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGAC 280796 |||||||| || || | | || | ||||| | || || | |||||||| || Sbjct 168408 AAGGTCAAGCTGGTGCTGGCCGCCTGTACCTGGCAGCGACCCCATCTTATCGTTCTTGAT 168349 Query 280797 GAGCCTACCAACTATCTGGACCGCGA 280822 |||||||||||||||||||| || || Sbjct 168348 GAGCCTACCAACTATCTGGATCGAGA 168323 >seq24 Length=170883 Score = 96.9 bits (106), Expect = 7e-15 Identities = 297/455 (65%), Gaps = 7/455 (2%) Strand=Plus/Minus Query 293319 GTTGACAACGGGGAACTCACCAGCGAGAGTGCGACGGCTGTAAATGTTCGAAGTGATGGG 293378 |||||||| ||||||| ||||| || || || ||||||||| || ||| ||| Sbjct 96839 GTTGACAATCTGGAACTCGCCAGCAAGCACTCGTCGAGAGTAAATGTTGGAGGTGTAGGG 96780 Query 293379 TTCGGCTGCCTCAACAGACCCGCAAATCTGAGCAGTAGATGCGGTAGGCATAAGAGCAGT 293438 ||| ||| | ||| |||||||| || || ||||| ||||| ||||| Sbjct 96779 CTCGAAGCACTCGTTGAAGCCGAGAATCTGAGAGGTGGAGGCGGTGGGCATGGGAGCAAC 96720 Query 293439 CGTCAGAGAGTTCCTCACACC---CTTCTTGACACGCGATTCGAGACCCGCCCAGTCC-A 293494 | ||| ||||| | || ||| |||| ||| | | | ||| | |||| ||| | Sbjct 96719 CAGCAGCGAGTTTCGCATACCGGTCTTCATGATATTGGCCTTAAGATCGTCCCACTCCCA 96660 Query 293495 GAGCAGTCTGAGGT-GTAACACCCCAGAGATGATACTGCATGATACCCTTGCTGGCAGGA 293553 ||| || |||| || || ||| || | | |||| | | ||| || ||||||| Sbjct 96659 AAGC--TCGGAGGGAGTCACGTTCCACAGGTCAAACTGAAGGTCTCCCCTGGAGGCAGGA 96602 Query 293554 GACCCCTCAAAGGTGGGATGGGGGCCATGCTCATCAGAGAGCTCGCAAGATGCCTCAACA 293613 || |||| ||||| | || || | |||| || | |||| |||| ||||| || Sbjct 96601 GAGCCCTGGAAGGTCTCGTAGGCACCGTCCTCAAGAGCCATCTCGTAAGAGGCCTCGACG 96542 Query 293614 GCAGCAAAGTAAATGTGCTCGAAGATCTCACGGTTGAGCTTGCGAGCCTGCTCAGAGTCA 293673 || | ||| ||| ||||||||||| ||||||||| |||| |||| ||| Sbjct 96541 GCTCCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCGGCAGACTCA 96482 Query 293674 AACGGCATCTTCAGCTGGAAGAACACATCCTGCAGACCCTGTACACCTACACCAACGGGG 293733 || || | ||| | ||| || ||||||||| ||||| | | ||| || Sbjct 96481 AAGGGAAGTCGCAGAGCCATGAAGGTGTCGGCCAGACCCTGAACACCCAGAGCAATAGGT 96422 Query 293734 CGACGACGCTTGTTGCTCGTCTCTGCCTCGGGAAC 293768 ||| | ||| ||||| | ||| |||||||||||| Sbjct 96421 CGATGTCGCATGTTGGACTTCTTTGCCTCGGGAAC 96387 >seq2 Length=1754098 Score = 89.7 bits (98), Expect = 1e-12 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 280721 TCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCA 280780 ||| |||||||||||| |||||| ||||||| | | ||| ||||| | |||| || Sbjct 1677640 TCTGTCTGGAGGCCAGCTGGTCAAGGTTGTCATTGCCGGAGCCATGTGGAACAACCCCCA 1677581 Query 280781 CGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 || | || ||||||||||||||||||||||||||||| || Sbjct 1677580 TCTGCTGGTGCTCGACGAGCCTACCAACTATCTGGACCGAGA 1677539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836220557004