Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01]
44 sequences; 20,877,144 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq3 167 5e-36
seq8 122 2e-22
seq24 96.9 7e-15
seq2 89.7 1e-12
>seq3
Length=1361780
Score = 167 bits (184), Expect = 5e-36
Identities = 560/859 (65%), Gaps = 22/859 (3%)
Strand=Plus/Minus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | ||| || |||||||||| ||||||||||||||||||||| |||
Sbjct 15184 TCGAAGAAGTTGGTCTTACCGGCCAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 15125
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
| ||||| ||||| | ||| || || || | | ||||| || |||||||| |
Sbjct 15124 GAGTTGTAGACCTTGGTGTTGCCGAGAGCAACCAGCAGTCGGTCGGCGACAAACTCAATG 15065
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742
||||| | ||| || | | ||||||||| | || || ||| || | || || | |
Sbjct 15064 TACTGGCACATGAGCTTGGCGTTCATGCCGAGCAGACCACAGGGCAGAGCGTCGGTCAGG 15005
Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCAC-CTGTGCCAGAGACAG 251801
|| |||| ||| || |||| ||||| | | | ||| || | | | | || |
Sbjct 15004 AACTCCTGCTCGATGCCAACAGCCTCGACAATGACGTCCTCGACAATCTTCTTG-GAGGG 14946
Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCG 251861
|||||| || | ||| | || || | |||| | ||||||||||||||| ||
Sbjct 14945 TCGGTTCTCGAGGTGAGAGAAGAGCAGACAGGCAAAGTCGGTGTGCAGACCCTCGTCTCG 14886
Query 251862 ACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAA 251921
| |||| ||||||||| | ||||| ||||| | || || ||| ||||||||||
Sbjct 14885 AGAAATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGACCTCGCTTCTTGAGCCAGAA 14826
Query 251922 GATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCG 251981
||| | | || || || ||||| | | ||||||||| | | |||| || ||
Sbjct 14825 GATGGAGGCGAAAGAGCCTGAGAAAAAGATACCCTCGACGGCGGCAAAGGCAATGAGCCG 14766
Query 251982 CTCAGCAAA---CGACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTTTCC 252038
||| |||| |||| || | || | |||| | ||||| | ||||||||
Sbjct 14765 CTCGCCAAAGGTGGACTCCTCGTCGGAAATCCACTTGAGAGCCCAGTCGGCCTTCTTCTT 14706
Query 252039 AACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCGAT 252098
| |||||| || ||||| || | || || |||| ||||| ||||| |||
Sbjct 14705 GATGCAGGGGATGGTCTCGATGGCGTTGAACAGGTAGTTTCGCTCCTTGGGGTCCTTGAT 14646
Query 252099 GAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGGTA 252158
| | || | || || ||||| | ||||| |||||| || | | |||||| |
Sbjct 14645 GTATGTGTCGATGAGCAGCGAGTAGGTTTCCGAGTGGATGTTCTCCATCATGATCTGGAA 14586
Query 252159 AGCATAGAA----TAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGCAA 252214
| ||||| | | | | ||| || | ||| || ||| || | | |
Sbjct 14585 GCCGTAGAAGCACTTGGC-CTCGGGAG---CCTGGACCTCGCCGGAGAATCGCTCCACCA 14530
Query 252215 TGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAGT 252274
|||||| | || || || ||| | | ||||||||| | |||| | |||||||
Sbjct 14529 GGTTCTCGTTGACGATTCCGTCGGAGGCAGCAAAGAAGGCCAGAACGTGAGAGATGAAGA 14470
Query 252275 GACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAG---GAA 252331
||||| |||| |||||| || ||||||| | ||||||| | | ||| ||
Sbjct 14469 ATCGCTCGTCGTTGTTGAGTCGGTTCTCCCAGTCGCCCATGTCCT--TGCCGAGATCGAT 14412
Query 252332 CTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCAGGG 252390
| || || | |||||||| | | | | |||||||||||||| ||| | | ||| ||
Sbjct 14411 C-TCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATCTGC-CAGATCTCATGG 14354
Query 252391 TACTTGATTGGGAA-AGCA 252408
|||| ||| ||||| ||||
Sbjct 14353 TACTGGATGGGGAAGAGCA 14335
>seq8
Length=1170456
Score = 122 bits (134), Expect = 2e-22
Identities = 183/257 (71%), Gaps = 6/257 (2%)
Strand=Plus/Minus
Query 279702 TCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCC 279761
|||||||| || || ||||||||||||||||| || | |||| | || | |||
Sbjct 169485 TCTCTGTCCGGAGGATGGAAGATGAAGCTGGCTCTTGCCACCGCCGTCCTGCGAAAGGCC 169426
Query 279762 GATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTA 279821
||| |||| |||||||||||||| |||||||| |||| ||| |||||| ||||||||
Sbjct 169425 GATATCCTGCTGCTTGATGAGCCCACCAACCATCTGGATACCGTCAACGTTGCCTGGCTG 169366
Query 279822 GTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGC 279881
|| |||||| | || ||| | | | | ||| |||| || || || ||||||||
Sbjct 169365 GTCAACTACCTCAACA-CCTGTGG--TATCACCTCCATCATCGTGTCCCATGACTCTGGT 169309
Query 279882 TTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAG 279941
||||| || ||| ||| |||||| ||||| |||| | | ||||| |||
Sbjct 169308 TTCCTCGACAACGTCTGCGAGTACATCATCCACTACGAGCGA---TTTAAGCTGCGAAAG 169252
Query 279942 CACATCGGCAACCTGTC 279958
||| || ||||||||
Sbjct 169251 TACAAGGGTAACCTGTC 169235
Score = 122 bits (134), Expect = 2e-22
Identities = 133/174 (76%), Gaps = 2/174 (1%)
Strand=Plus/Minus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
||||||||||||||| ||||||| ||||| || || || |||| ||||||||||| |||
Sbjct 169839 GGTGAGGATCTGTGTAACTGTGAGTTCTCTCTTGCTTACGGTGCCAAGATTCTGCTGAAC 169780
Query 279405 TCTACCC-GCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGC 279463
|||| || | || | ||||| ||| || || |||||| |||||||| || ||
Sbjct 169779 CGAACCCAGCTGCGAC-TTAAGCGAGGCCGACGATACGGTCTCTGTGGTCCCAACGGTGC 169721
Query 279464 GGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCC 279517
|||||| |||||| ||||| |||||||| ||||| ||| | || || || ||
Sbjct 169720 CGGTAAGTCCACTCTTATGCGAGCCATTGCCAACGGCCAGGTCGAGGGCTTCCC 169667
Score = 87.8 bits (96), Expect = 4e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 280677 CTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAG 280736
|| ||||| || |||||| || |||||||||| || || ||||| || || || |||
Sbjct 168468 CTTGGTCTCGAGCCCGAGCTTGTCTCTCACTCTCGAATCCGAGGTCTGTCCGGTGGACAG 168409
Query 280737 AAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGAC 280796
|||||||| || || | | || | ||||| | || || | |||||||| ||
Sbjct 168408 AAGGTCAAGCTGGTGCTGGCCGCCTGTACCTGGCAGCGACCCCATCTTATCGTTCTTGAT 168349
Query 280797 GAGCCTACCAACTATCTGGACCGCGA 280822
|||||||||||||||||||| || ||
Sbjct 168348 GAGCCTACCAACTATCTGGATCGAGA 168323
>seq24
Length=170883
Score = 96.9 bits (106), Expect = 7e-15
Identities = 297/455 (65%), Gaps = 7/455 (2%)
Strand=Plus/Minus
Query 293319 GTTGACAACGGGGAACTCACCAGCGAGAGTGCGACGGCTGTAAATGTTCGAAGTGATGGG 293378
|||||||| ||||||| ||||| || || || ||||||||| || ||| |||
Sbjct 96839 GTTGACAATCTGGAACTCGCCAGCAAGCACTCGTCGAGAGTAAATGTTGGAGGTGTAGGG 96780
Query 293379 TTCGGCTGCCTCAACAGACCCGCAAATCTGAGCAGTAGATGCGGTAGGCATAAGAGCAGT 293438
||| ||| | ||| |||||||| || || ||||| ||||| |||||
Sbjct 96779 CTCGAAGCACTCGTTGAAGCCGAGAATCTGAGAGGTGGAGGCGGTGGGCATGGGAGCAAC 96720
Query 293439 CGTCAGAGAGTTCCTCACACC---CTTCTTGACACGCGATTCGAGACCCGCCCAGTCC-A 293494
| ||| ||||| | || ||| |||| ||| | | | ||| | |||| ||| |
Sbjct 96719 CAGCAGCGAGTTTCGCATACCGGTCTTCATGATATTGGCCTTAAGATCGTCCCACTCCCA 96660
Query 293495 GAGCAGTCTGAGGT-GTAACACCCCAGAGATGATACTGCATGATACCCTTGCTGGCAGGA 293553
||| || |||| || || ||| || | | |||| | | ||| || |||||||
Sbjct 96659 AAGC--TCGGAGGGAGTCACGTTCCACAGGTCAAACTGAAGGTCTCCCCTGGAGGCAGGA 96602
Query 293554 GACCCCTCAAAGGTGGGATGGGGGCCATGCTCATCAGAGAGCTCGCAAGATGCCTCAACA 293613
|| |||| ||||| | || || | |||| || | |||| |||| ||||| ||
Sbjct 96601 GAGCCCTGGAAGGTCTCGTAGGCACCGTCCTCAAGAGCCATCTCGTAAGAGGCCTCGACG 96542
Query 293614 GCAGCAAAGTAAATGTGCTCGAAGATCTCACGGTTGAGCTTGCGAGCCTGCTCAGAGTCA 293673
|| | ||| ||| ||||||||||| ||||||||| |||| |||| |||
Sbjct 96541 GCTCCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCGGCAGACTCA 96482
Query 293674 AACGGCATCTTCAGCTGGAAGAACACATCCTGCAGACCCTGTACACCTACACCAACGGGG 293733
|| || | ||| | ||| || ||||||||| ||||| | | ||| ||
Sbjct 96481 AAGGGAAGTCGCAGAGCCATGAAGGTGTCGGCCAGACCCTGAACACCCAGAGCAATAGGT 96422
Query 293734 CGACGACGCTTGTTGCTCGTCTCTGCCTCGGGAAC 293768
||| | ||| ||||| | ||| ||||||||||||
Sbjct 96421 CGATGTCGCATGTTGGACTTCTTTGCCTCGGGAAC 96387
>seq2
Length=1754098
Score = 89.7 bits (98), Expect = 1e-12
Identities = 81/102 (79%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 280721 TCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCA 280780
||| |||||||||||| |||||| ||||||| | | ||| ||||| | |||| ||
Sbjct 1677640 TCTGTCTGGAGGCCAGCTGGTCAAGGTTGTCATTGCCGGAGCCATGTGGAACAACCCCCA 1677581
Query 280781 CGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822
|| | || ||||||||||||||||||||||||||||| ||
Sbjct 1677580 TCTGCTGGTGCTCGACGAGCCTACCAACTATCTGGACCGAGA 1677539
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027836220557004
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |