Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3 118 2e-21 seq8 114 3e-20 >seq3 Length=1361780 Score = 118 bits (130), Expect = 2e-21 Identities = 554/868 (64%), Gaps = 29/868 (3%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 |||||||||||||| | || || ||| | ||||| |||||||| | ||| |||| ||| Sbjct 14340 TTCCCCATCCAGTACCATGAGATCTGGCAGATGTACAAGAAGGCTGAGGCTTCCTTCTGG 14399 Query 242935 ACCACCGAGGAAGTTC---CTCTGAACGCAGACGTCGTCGACTGGCGCGAGAA---ACTC 242988 || | ||||| | || ||| | | | ||| | | ||||||| ||||| |||| Sbjct 14400 ACTGCTGAGGA-GATCGATCTCGGCAAG--GACATGGGCGACTGG---GAGAACCGACTC 14453 Query 242989 AATGACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGT 243048 || ||||||| || |||||| ||| |||| | || || || | |||||| || Sbjct 14454 AACAACGACGAGCGATTCTTCATCTCTCACGTTCTGGCCTTCTTTGCTGCCTCCGACGGA 14513 Query 243049 ATTGTGATGGAAAATCTGCAG-ACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACG 243107 || || | || || ||| | | | | | | | | | || || ||| ||||| Sbjct 14514 ATCGTCAACGAGAACCTGGTGGAGCGATTCTCCGGCG-AGGTCCAGGCTCCCGAGGCCAA 14572 Query 243108 GCAATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCT 243167 | || || | | ||| | | | || ||||| || ||| || | || || Sbjct 14573 GTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCGGAAACCTACTCGCTGCT 14632 Query 243168 TATCGACGCGCTTATTTCAGATGAAC---AAGAGCGAAACGAGCTTTTCGACGCCATCGA 243224 |||||| | || ||| | || | | ||||||||| | || ||| |||||||||| Sbjct 14633 CATCGACACA--TACATCA-AGGACCCCAAGGAGCGAAACTACCTGTTCAACGCCATCGA 14689 Query 243225 AAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGGTAA 243284 | ||| || | | || ||||| | ||||||| |||||| | || | Sbjct 14690 GACCATCCCCTGCATCAAGAAGAAGGCCGACTGGGCTCTCAAGTGGATTTCCGACGAGGA 14749 Query 243285 ATCA---TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGG 243341 || |||| ||||| ||| | |||| | ||| || ||||| | || || || Sbjct 14750 GTCCACCTTTGGCGAGCGGCTCATTGCCTTTGCCGCCGTCGAGGGTATCTTTTTCTCAGG 14809 Query 243342 GAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTC 243401 |||| | ||||||| ||||| ||| |||| | ||||| |||||| | || Sbjct 14810 CTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTCACCTTCTC 14869 Query 243402 TAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTC 243461 |||||| |||| ||| |||||||| || ||| | || | || | | || Sbjct 14870 CAACGAGCTCATTTCTCGAGACGAGGGTCTGCACACCGACTTTGCCTGTCTGCTCTTCTC 14929 Query 243462 AAAGCTCCAGAACAAGCTACCATTCGAAACG---GTCAAACAAATCATCACAGAAGCAGT 243518 | ||| ||||| | ||| | | | | | ||| | | |||| || || || Sbjct 14930 TCACCTCGAGAAC---CGACCCTCCAAGAAGATTGTCGAGGACGTCATTGTCGAGGCTGT 14986 Query 243519 TGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTC 243578 || | ||| |||| ||| | ||||||| | || || | || | ||||||||| | Sbjct 14987 TGGCATCGAGCAGGAGTTCCTGACCGACGCTCTGCCCTGTGGTCTGCTCGGCATGAACGC 15046 Query 243579 TGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTA 243638 | |||||| | |||||||| || || || |||||||| | | | || || || | Sbjct 15047 CAAGCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGACTGCTGGTTGCTCTCGGCAA 15106 Query 243639 TGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGG 243698 || || |||||||||| |||||||| | ||| |||||| ||| || || || Sbjct 15107 CACCAAGGTCTACAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGCCGG 15166 Query 243699 GAAAACTAACTTCTTCGAAAAGCGTGTC 243726 || || ||||||||||| ||||| ||| Sbjct 15167 TAAGACCAACTTCTTCGAGAAGCGAGTC 15194 >seq8 Length=1170456 Score = 114 bits (126), Expect = 3e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 334134 CCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTCA 334193 ||||| | ||||| || ||| || ||||| | | ||| | |||||| || || Sbjct 169619 CCGTCAATGTCGTGGTCGACGAAAACAGTTCGACACTCCTCCTGGGTGGGGAAGCCCTCG 169678 Query 334194 AGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACAC 334253 | ||| ||||| |||| || ||||| ||||| || ||||| || ||||| || ||||| Sbjct 169679 ACCTGGCCGTTGGCAATGGCTCGCATAAGAGTGGACTTACCGGCACCGTTGGGACCACAG 169738 Query 334254 AGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCCA 334313 |||||||| || || ||||| || | | | || |||||| ||||| || || Sbjct 169739 AGACCGTATCGTCGGCCTCGCTTAAGTCGCAGCTGGGTTCGGTTCAGCAGAATCTTGGCA 169798 Query 334314 CCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 || || || ||||| || ||||| | ||||||||||||||| Sbjct 169799 CCGTAAGCAAGAGAGAACTCACAGTTACACAGATCCTCACC 169839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879378251400