Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01]
44 sequences; 20,877,144 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq3 167 2e-36
seq24 111 1e-19
seq4 102 8e-17
seq14 95.1 1e-14
>seq3
Length=1361780
Score = 167 bits (184), Expect = 2e-36
Identities = 405/608 (67%), Gaps = 19/608 (3%)
Strand=Plus/Plus
Query 46979 CATCCACACGGAAATGTACAACCTTCTCATACACGCCCTCATCAAAGACGAAGAGAAGC- 47037
||||||| |||||| ||| || ||||| || | |||||| ||| || |||
Sbjct 14606 CATCCACTCGGAAACCTACTCGCTGCTCATCGACACATACATCAAGGACCCCAAGGAGCG 14665
Query 47038 AAGCGACGCTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGG 47097
|| | || || || |||| |||||| ||| |||||| | | |||||||| ||||
Sbjct 14666 AAACTAC-CTGTTCAACGCCATCGAGACCATCCCCTGCATCAAGAAGAAGGCCGACTGGG 14724
Query 47098 CCATGAAGTACATTGAAAACGAAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCA 47157
| | |||| ||| |||| | ||| | | ||| || | || || || |||
Sbjct 14725 CTCTCAAGTGGATTTCCGACGAGGAGTCCACCTTTGGCGAGCGGCTCATTGCCTTTGCCG 14784
Query 47158 TCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAG 47217
||||||||| |||| ||||| ||| || || | || || | | || | ||
Sbjct 14785 CCGTCGAGGGTATCTTTTTCTCAGGCTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAG 14844
Query 47218 GAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACA 47277
| | |||||||||||||| || ||||||||| || || ||||||| || |||||||
Sbjct 14845 GTCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATTTCTCGAGACGAGGGTCTGCACA 14904
Query 47278 CCAACTTTGCCTGT---CTCTACT-ACAACACTAGAGTCGA---TCAAAAGTTGGACGTG 47330
|| ||||||||||| |||| || || | | ||| ||| || || || |
Sbjct 14905 CCGACTTTGCCTGTCTGCTCTTCTCTCACCTCGAGAACCGACCCTCCAA-----GAAG-- 14957
Query 47331 CCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAG 47390
| ||| ||| | ||| ||| || || | ||| ||| |||||| | ||||
Sbjct 14958 ---ATTGTCGAGGACGTCATTGTCGAGGCTGTTGGCATCGAGCAGGAGTTCCTGACCGAC 15014
Query 47391 GCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTT 47450
||||||||| | | | || |||||||| || | ||| | ||||||| || |||
Sbjct 15015 GCTCTGCCCTGTGGTCTGCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATTGAGTTT 15074
Query 47451 GTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCA 47510
||||||||||| ||||| ||| || | ||||| | ||| || || || ||
Sbjct 15075 GTCGCCGACCGACTGCTGGTTGCTCTCGGCAACACCAAGGTCTACAACTCCACCAACCCC 15134
Query 47511 TTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTC 47570
||||| || ||| | ||||| || || | || ||||||||||| ||||||||||| |||
Sbjct 15135 TTCGACTTCATGGAGAACATCTCTCTGGCCGGTAAGACCAACTTCTTCGAGAAGCGAGTC 15194
Query 47571 GGCGAATA 47578
||| ||
Sbjct 15195 TCCGACTA 15202
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/227 (70%), Gaps = 2/227 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| || || | ||||| |||| ||| | || ||||| || || || ||||| ||
Sbjct 557871 CCTCCTCGGAGTCGCAGAACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 557812
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || ||||| || || ||| | |||| ||||||||| || || ||
Sbjct 557811 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGG 557752
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| ||| || ||||| |||| || | |||||| | ||| ||
Sbjct 557751 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCAATGGTGTCAGAGGACTCCAC 557693
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA 127112
|||| ||| | || ||||| || || || || ||||| || ||||
Sbjct 557692 CTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 557646
>seq24
Length=170883
Score = 111 bits (122), Expect = 1e-19
Identities = 448/689 (65%), Gaps = 29/689 (4%)
Strand=Plus/Minus
Query 146893 CCGTACTCGTCGAGGAGGCCGGGATACTTTTTGGGACAGAACAGCGACCATTCTTTATTC 146952
||||| ||||| || |||||| ||| ||||| || | || | ||| || |||
Sbjct 96007 CCGTAGACGTCGTCCAGACCGGGACACTCGTTGGGGCACATGAGAGTCCACTCGGCGTTC 95948
Query 146953 TCCTTCACGCGTTCCATAAACAAATCGGGAATCCAAAGGCCCAGCATCAAGTCGCGAGCC 147012
| || || || ||||| |||| |||||| ||||| ||| |||| | || ||| || ||
Sbjct 95947 TGCTCGACTCGCTCCATGAACAGATCGGGGATCCACAGGGCCAGGAACAGGTCTCGGGCT 95888
Query 147013 TTGGCGTCCTCGGAGCCCATGTTGCGTCTCAAGTTGAGGACATCGTAAATTTCCGGATGC 147072
||||| || ||| || || | | || ||| | || || |||
Sbjct 95887 CGAATCTCCTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGATGTCGTCGTGC 95828
Query 147073 CAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGCTTA---CCGCCCTGATCGACGTGG 147129
|| ||||| | ||| ||| | || || |||||| || ||||| || ||||
Sbjct 95827 CAGGGCTCAAGGTACATGGCAAAGGCTCCGGGTCGCTTGTTGCCTCCCTGGTCCACGTAT 95768
Query 147130 CGCACCATGTTATTGAAGACTCGTAACATGGACACGAGGCCGCCGGATTTTG---TGGTG 147186
|| | |||| ||| |||| || | ||||| ||||| ||| ||| || |||||
Sbjct 95767 CGGGCAGTGTTGTTGTAGACACGCAGCATGGGCACGATACCGTTGGAGGTTCCGTTGGTG 95708
Query 147187 CCGT---TGTATTGAGC-----GCT--GACGCTTTGCACGCTCAGCCCGAGACCTCCGCC 147236
||| |||| |||| ||| || | | || | | || |||| ||| || |
Sbjct 95707 CCGGCAATGTAG-GAGCCGGTGGCTCGGATGTTGTGGATGGAGAGACCGATACCGCCAGC 95649
Query 147237 CAGA-TTCGAAATCAAAGCGGAC-TCGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCT 147294
||| || ||||||| ||| | || || | ||| | |||||||||||||||| |||
Sbjct 95648 -AGACTTGGAAATCAGAGCACAGGTCTTG-AGGGTATCGTAGATGCCGTCGATGGAGTCG 95591
Query 147295 TCCTTGATGCATTGC--AGGAAACACGAACACATTTGGGGACGACACGTGCCCGCCGCAA 147352
||||| ||| ||| ||||||||||| |||| ||||| | || || ||
Sbjct 95590 TCCTTCATG--TTGACAAGGAAACACGACGACATCTGGGGCTGGGGGGTTCCAGCGTTGT 95533
Query 147353 ACAGCGTGGGGCTGGCGTGCGTGAACGTGCC-CAGACTCATCAATTGATACGTTTCAATG 147411
| || |||||| ||||| || || || | | || ||| | | || || || |||
Sbjct 95532 AGAGGGTGGGGGAAGCGTGGGTAAA-GTACTTCTGAGACATGTAGTTGTAGGTCTCGATG 95474
Query 147412 GCGCTCATAACGTCATCGCCGTGAATGGCCAGGGCGACGCGCATGAGCATGTGCTGGGGT 147471
|| | || ||| || ||||| || | | || || ||||||| ||| |||||||||
Sbjct 95473 GCTCGGGCAATGTCGTCACCGTGGATTCCGACGGACACTCGCATGATCATCTGCTGGGGT 95414
Query 147472 CGTTCCGCAATCACGTCATTGACTTTTAATAGATATCCATTGGT-CAGAGTTTTGAAACC 147530
|| || |||| | | |||||| || || ||| | | | | ||| ||||| || ||
Sbjct 95413 CGCTCGGCAACAGCTCCGTTGACTCGCAACAGGTATGC-TCGCTCCAGGGTTTTAAAGCC 95355
Query 147531 AAAGTACTTGTAGTCGTAGTCCCTGTTGT 147559
|||||| |||||| | |||| | || ||
Sbjct 95354 AAAGTAGTTGTAGGTGAAGTCTCGGTCGT 95326
>seq4
Length=1325655
Score = 102 bits (112), Expect = 8e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | ||||| || | ||| | || ||||| || || || ||||| ||
Sbjct 386812 CCACCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 386753
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || ||||| || || ||| |||| | ||||||||| || || ||
Sbjct 386752 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 386693
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| ||| || ||||| |||| |||| |||||| | | ||| ||
Sbjct 386692 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATGGTGTCGGAAGACTCCAC 386634
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | ||| | || || ||||| || || || ||||| ||||||||
Sbjct 386633 CTCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAGATCTGCAT 386586
>seq14
Length=605277
Score = 95.1 bits (104), Expect = 1e-14
Identities = 116/157 (74%), Gaps = 1/157 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | ||| | |||| ||| | |||||||| || || || ||||||||
Sbjct 299937 CCACCTCGAAGTCGGAGAACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGAG 299996
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || ||| ||| || ||||| ||||||||| | |||| ||||||||| || || ||
Sbjct 299997 AGAGTTCGACCATCCTCAAGCTGCTTTCCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGA 300056
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGT 127042
|| |||||||||||| ||| || ||||| |||||
Sbjct 300057 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 300093
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964
|||| ||| | || ||||| || || || ||||| || | || || || ||
Sbjct 299727 ACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCGTCCTCA 299786
Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024
||||| |||||||| | |||| ||||||||| || || || || ||||||||||||
Sbjct 299787 AGCTGCTTTCCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGA 299846
Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084
|| || ||||| | || | |||||| | ||| || |||| || | || ||
Sbjct 299847 ATCTTAGACTTGACATTGTCAATGGTGTCGGAGGACTCAACCTCGAGAGTGATGGTCTTT 299906
Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| ||||| || || ||||| ||||||||
Sbjct 299907 CCAGTCAGGGTCTTGACAAAGATCTGCAT 299935
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500538474560
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