Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3 167 2e-36 seq24 111 1e-19 seq4 102 8e-17 seq14 95.1 1e-14 >seq3 Length=1361780 Score = 167 bits (184), Expect = 2e-36 Identities = 405/608 (67%), Gaps = 19/608 (3%) Strand=Plus/Plus Query 46979 CATCCACACGGAAATGTACAACCTTCTCATACACGCCCTCATCAAAGACGAAGAGAAGC- 47037 ||||||| |||||| ||| || ||||| || | |||||| ||| || ||| Sbjct 14606 CATCCACTCGGAAACCTACTCGCTGCTCATCGACACATACATCAAGGACCCCAAGGAGCG 14665 Query 47038 AAGCGACGCTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGG 47097 || | || || || |||| |||||| ||| |||||| | | |||||||| |||| Sbjct 14666 AAACTAC-CTGTTCAACGCCATCGAGACCATCCCCTGCATCAAGAAGAAGGCCGACTGGG 14724 Query 47098 CCATGAAGTACATTGAAAACGAAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCA 47157 | | |||| ||| |||| | ||| | | ||| || | || || || ||| Sbjct 14725 CTCTCAAGTGGATTTCCGACGAGGAGTCCACCTTTGGCGAGCGGCTCATTGCCTTTGCCG 14784 Query 47158 TCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAG 47217 ||||||||| |||| ||||| ||| || || | || || | | || | || Sbjct 14785 CCGTCGAGGGTATCTTTTTCTCAGGCTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAG 14844 Query 47218 GAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACA 47277 | | |||||||||||||| || ||||||||| || || ||||||| || ||||||| Sbjct 14845 GTCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATTTCTCGAGACGAGGGTCTGCACA 14904 Query 47278 CCAACTTTGCCTGT---CTCTACT-ACAACACTAGAGTCGA---TCAAAAGTTGGACGTG 47330 || ||||||||||| |||| || || | | ||| ||| || || || | Sbjct 14905 CCGACTTTGCCTGTCTGCTCTTCTCTCACCTCGAGAACCGACCCTCCAA-----GAAG-- 14957 Query 47331 CCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAG 47390 | ||| ||| | ||| ||| || || | ||| ||| |||||| | |||| Sbjct 14958 ---ATTGTCGAGGACGTCATTGTCGAGGCTGTTGGCATCGAGCAGGAGTTCCTGACCGAC 15014 Query 47391 GCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTT 47450 ||||||||| | | | || |||||||| || | ||| | ||||||| || ||| Sbjct 15015 GCTCTGCCCTGTGGTCTGCTCGGCATGAACGCCAAGCTCATGTGCCAGTACATTGAGTTT 15074 Query 47451 GTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCA 47510 ||||||||||| ||||| ||| || | ||||| | ||| || || || || Sbjct 15075 GTCGCCGACCGACTGCTGGTTGCTCTCGGCAACACCAAGGTCTACAACTCCACCAACCCC 15134 Query 47511 TTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTC 47570 ||||| || ||| | ||||| || || | || ||||||||||| ||||||||||| ||| Sbjct 15135 TTCGACTTCATGGAGAACATCTCTCTGGCCGGTAAGACCAACTTCTTCGAGAAGCGAGTC 15194 Query 47571 GGCGAATA 47578 ||| || Sbjct 15195 TCCGACTA 15202 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || | ||||| |||| ||| | || ||||| || || || ||||| || Sbjct 557871 CCTCCTCGGAGTCGCAGAACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 557812 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || || ||| | |||| ||||||||| || || || Sbjct 557811 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGG 557752 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||||| |||| || | |||||| | ||| || Sbjct 557751 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCAATGGTGTCAGAGGACTCCAC 557693 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA 127112 |||| ||| | || ||||| || || || || ||||| || |||| Sbjct 557692 CTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 557646 >seq24 Length=170883 Score = 111 bits (122), Expect = 1e-19 Identities = 448/689 (65%), Gaps = 29/689 (4%) Strand=Plus/Minus Query 146893 CCGTACTCGTCGAGGAGGCCGGGATACTTTTTGGGACAGAACAGCGACCATTCTTTATTC 146952 ||||| ||||| || |||||| ||| ||||| || | || | ||| || ||| Sbjct 96007 CCGTAGACGTCGTCCAGACCGGGACACTCGTTGGGGCACATGAGAGTCCACTCGGCGTTC 95948 Query 146953 TCCTTCACGCGTTCCATAAACAAATCGGGAATCCAAAGGCCCAGCATCAAGTCGCGAGCC 147012 | || || || ||||| |||| |||||| ||||| ||| |||| | || ||| || || Sbjct 95947 TGCTCGACTCGCTCCATGAACAGATCGGGGATCCACAGGGCCAGGAACAGGTCTCGGGCT 95888 Query 147013 TTGGCGTCCTCGGAGCCCATGTTGCGTCTCAAGTTGAGGACATCGTAAATTTCCGGATGC 147072 ||||| || ||| || || | | || ||| | || || ||| Sbjct 95887 CGAATCTCCTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGATGTCGTCGTGC 95828 Query 147073 CAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGCTTA---CCGCCCTGATCGACGTGG 147129 || ||||| | ||| ||| | || || |||||| || ||||| || |||| Sbjct 95827 CAGGGCTCAAGGTACATGGCAAAGGCTCCGGGTCGCTTGTTGCCTCCCTGGTCCACGTAT 95768 Query 147130 CGCACCATGTTATTGAAGACTCGTAACATGGACACGAGGCCGCCGGATTTTG---TGGTG 147186 || | |||| ||| |||| || | ||||| ||||| ||| ||| || ||||| Sbjct 95767 CGGGCAGTGTTGTTGTAGACACGCAGCATGGGCACGATACCGTTGGAGGTTCCGTTGGTG 95708 Query 147187 CCGT---TGTATTGAGC-----GCT--GACGCTTTGCACGCTCAGCCCGAGACCTCCGCC 147236 ||| |||| |||| ||| || | | || | | || |||| ||| || | Sbjct 95707 CCGGCAATGTAG-GAGCCGGTGGCTCGGATGTTGTGGATGGAGAGACCGATACCGCCAGC 95649 Query 147237 CAGA-TTCGAAATCAAAGCGGAC-TCGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCT 147294 ||| || ||||||| ||| | || || | ||| | |||||||||||||||| ||| Sbjct 95648 -AGACTTGGAAATCAGAGCACAGGTCTTG-AGGGTATCGTAGATGCCGTCGATGGAGTCG 95591 Query 147295 TCCTTGATGCATTGC--AGGAAACACGAACACATTTGGGGACGACACGTGCCCGCCGCAA 147352 ||||| ||| ||| ||||||||||| |||| ||||| | || || || Sbjct 95590 TCCTTCATG--TTGACAAGGAAACACGACGACATCTGGGGCTGGGGGGTTCCAGCGTTGT 95533 Query 147353 ACAGCGTGGGGCTGGCGTGCGTGAACGTGCC-CAGACTCATCAATTGATACGTTTCAATG 147411 | || |||||| ||||| || || || | | || ||| | | || || || ||| Sbjct 95532 AGAGGGTGGGGGAAGCGTGGGTAAA-GTACTTCTGAGACATGTAGTTGTAGGTCTCGATG 95474 Query 147412 GCGCTCATAACGTCATCGCCGTGAATGGCCAGGGCGACGCGCATGAGCATGTGCTGGGGT 147471 || | || ||| || ||||| || | | || || ||||||| ||| ||||||||| Sbjct 95473 GCTCGGGCAATGTCGTCACCGTGGATTCCGACGGACACTCGCATGATCATCTGCTGGGGT 95414 Query 147472 CGTTCCGCAATCACGTCATTGACTTTTAATAGATATCCATTGGT-CAGAGTTTTGAAACC 147530 || || |||| | | |||||| || || ||| | | | | ||| ||||| || || Sbjct 95413 CGCTCGGCAACAGCTCCGTTGACTCGCAACAGGTATGC-TCGCTCCAGGGTTTTAAAGCC 95355 Query 147531 AAAGTACTTGTAGTCGTAGTCCCTGTTGT 147559 |||||| |||||| | |||| | || || Sbjct 95354 AAAGTAGTTGTAGGTGAAGTCTCGGTCGT 95326 >seq4 Length=1325655 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| || | ||| | || ||||| || || || ||||| || Sbjct 386812 CCACCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 386753 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || || ||| |||| | ||||||||| || || || Sbjct 386752 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 386693 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||||| |||| |||| |||||| | | ||| || Sbjct 386692 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATGGTGTCGGAAGACTCCAC 386634 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || ||||| || || || ||||| |||||||| Sbjct 386633 CTCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAGATCTGCAT 386586 >seq14 Length=605277 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/157 (74%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||| | |||| ||| | |||||||| || || || |||||||| Sbjct 299937 CCACCTCGAAGTCGGAGAACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGAG 299996 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || ||||| ||||||||| | |||| ||||||||| || || || Sbjct 299997 AGAGTTCGACCATCCTCAAGCTGCTTTCCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGA 300056 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGT 127042 || |||||||||||| ||| || ||||| ||||| Sbjct 300057 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 300093 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||| ||| | || ||||| || || || ||||| || | || || || || Sbjct 299727 ACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCGTCCTCA 299786 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| |||||||| | |||| ||||||||| || || || || |||||||||||| Sbjct 299787 AGCTGCTTTCCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGA 299846 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||||| | || | |||||| | ||| || |||| || | || || Sbjct 299847 ATCTTAGACTTGACATTGTCAATGGTGTCGGAGGACTCAACCTCGAGAGTGATGGTCTTT 299906 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| || || ||||| |||||||| Sbjct 299907 CCAGTCAGGGTCTTGACAAAGATCTGCAT 299935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500538474560