Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq24 203 4e-47 seq3 134 2e-26 seq1 89.7 6e-13 >seq24 Length=170883 Score = 203 bits (224), Expect = 4e-47 Identities = 1138/1794 (63%), Gaps = 57/1794 (3%) Strand=Plus/Minus Query 115519 TCAAGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTC 115578 |||| | ||||||| ||||| || ||| | | ||| ||||||||||| || ||| Sbjct 97183 TCAATGGTGAACTGGATGGGGGCGGCAGCAGCCATGGTTCGCAGGTAGTACATACCAGTC 97124 Query 115579 TTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTT 115638 ||||| |||| ||||||| | || | ||||| |||| | |||| | || || Sbjct 97123 TTGAGACCCTTCTTCCAGCCGTAGAAGTGCATGGAGGTGAGCTTGCCCATGGTGGGG--- 97067 Query 115639 TCCATGAAGAG---GTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCC 115695 ||| ||| | | ||| | ||||| || || |||||| | || || || ||| Sbjct 97066 TCCTTGATGTGAATGTTGAGGGACTGGGACTGGTCAATGAAGGGCGATCGGTCGGCAGCC 97007 Query 115696 ATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCA 115755 || || || | |||| | || |||||||| |||| ||| |||| ||| || || Sbjct 97006 ATCTCGATGATTCGCTTCTGCGAAATCTCCCACACGGTTCGGTACAGGTCCTTGATCTCC 96947 Query 115756 TCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGA---GATCCTTC 115812 | ||||| | ||| || || | || || || | | ||| || | | |||| Sbjct 96946 TGGGGGATGTTGGGGATGTTCTGCACGGATCCGT-TGTC--GGCCACGATTCGGTTCTTC 96890 Query 115813 ATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCA----CGAGGTGCTTATTGAC 115868 || || ||| ||||||| || || |||| | | ||| | ||||| Sbjct 96889 ATGGTCTCATTCCACAGACCAACCTCAACCAGGTCCTTGAGCAGCCAGGGG----TTGAC 96834 Query 115869 AACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTGTATGGCTCAA 115927 || ||||| || || || |||| ||| || ||||||| ||||| ||||| | Sbjct 96833 AATCTGGAACTCGCCAGCAAGCACTCGTCG-AGAGTAAATGTTGGAGGTGTAGGGCTCGA 96775 Query 115928 AGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAA 115987 ||||||| ||| || | || || | |||||||| ||||||||||| || | || | Sbjct 96774 AGCACTCGTTGAAGCCGAGAATCTGAGAGGTGGAGGCGGTGGGCATGGGAGCAACCAGCA 96715 Query 115988 GGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGA 116047 | ||| || | ||| | | | || |||| || ||||||| || | | Sbjct 96714 GCGAGTTTCGCATACCGGTCTTCATGATATTGGCCTTAAGATCGTCCCACTCCCAA---A 96658 Query 116048 GCTTTGTCTC---CCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATC 116104 ||| | | | | ||||| |||||||| ||| || ||| || || || | Sbjct 96657 GCTCGGAGGGAGTCACGTTCCACAGGTCAAACTGAAGGTCTCCCCTGGAGGCAGGAGAGC 96598 Query 116105 CCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTG 116164 ||| || ||||| || | || || | |||| ||| | ||||||| |||| Sbjct 96597 CCTGGAAGGTCTCGTAGGCACCGTCCTCAAGAGCCATCTCGTAAGAGGCCTCGACGGCTC 96538 Query 116165 CGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACG 116224 |||| || || ||||| || || | || | |||||||||| | || ||||| | Sbjct 96537 CGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCGGCAGACTCAAAGG 96478 Query 116225 CGAGACGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGA 116283 || || || | || || || || ||||| || ||||| || |||| || ||| Sbjct 96477 GAAGTCG-CAGAGCCATGAAGGTGTCGGCCAGACCCTGAACACCCAGAGCAATAGGTCGA 96419 Query 116284 TGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGATAAAAATTCCTATCGATAACC 116340 |||| ||| || ||||| || ||| ||||| || | || | ||||||| Sbjct 96418 TGTCGCATGTTGGACTTCTTTGC---CTCGGGAACGGGGTAGTAGTTTCGGTCGATAATG 96362 Query 116341 CTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAA---- 116396 || || ||| | || || | ||| || || ||||| | | | || | Sbjct 96361 GCGTTGAGGTTTCGCACAATGACTTTGGCGATATCGTGCAGCTTCTTGAAGTCGTAGAAG 96302 Query 116397 -ACTGCGAGTC-TCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACA 116454 | | | ||| ||| | ||||| | | || ||||| || || ||||| || || ||| Sbjct 96301 GAGTTGGTGTCGTCTCGAGTGACAAAGGTGGGCAGGGCAATGGAGGCCAGGTTGCAAACA 96242 Query 116455 GAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATG 116514 | |||||| | || |||||| | ||| || |||| || ||| ||| ||| Sbjct 96241 GCCACCTCATCGGGAGAAGAGTACTCGACAATCTCGCAGCACAGGTTGGAAGACTTGATG 96182 Query 116515 GTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGC 116574 || || | |||||| || || |||||| ||| || ||||||||||||||||| | || Sbjct 96181 GTTCCGAGGTTCTTCTGGTTGGACTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAGGGG 96122 Query 116575 GTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGT 116633 | || | ||| || ||| | | |||||| | ||| | | || | ||| || | || Sbjct 96121 TTACCGGACTCGGTCTGGCAGTCGAGAATGTGGTACCACAGCTTCTG-GGCGGGGATGGT 96063 Query 116634 GGCGTTG-GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCA 116692 ||| | |||| ||||||| |||||||| ||| || || ||||| || || Sbjct 96062 -TCGTCGACCTCGGCCCTCCTTCTCGTACTGCTCGTACAGCTGCTTGAACTCGTCGCCGT 96004 Query 116693 CAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCT 116752 | || || || || || | || || | ||||| ||| | | || || Sbjct 96003 AGACGTCGTCCAGACCGGGACACTCGTTGGGGCACATGAGAGTCCACTCGGCGTTCTGCT 95944 Query 116753 CAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAG 116812 | || |||| |||||| || || |||||||| || ||| ||| || || || ||| Sbjct 95943 CGACTCGCTCCATGAACAGATCGGGGATCCACAGGGCCAGGAACAGGTCTCGGGCTCGAA 95884 Query 116813 CTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACG 116872 || || | || || || |||| ||| | || || | ||| || ||||||| | Sbjct 95883 TCTCCTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGATGTCGTCGTGCCAGG 95824 Query 116873 GTTCCAGGTACACCGCGATTGACCC--CTTGC--GACGACCAGCCTGGTTTACATACCTC 116928 | || ||||||| || | | || | || | | || |||||| || || | Sbjct 95823 GCTCAAGGTACATGGCAAAGGCTCCGGGTCGCTTGTTG-CCTCCCTGGTCCACGTATCGG 95765 Query 116929 GCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCC 116988 || || ||| | || || ||||| || | |||||| | || || || || || Sbjct 95764 GCAGTGTTGTTGTAGACACGCAGCATGGGCACGATACCGTTGGAGGTTCCGTTGGTGCCG 95705 Query 116989 CGAA--TACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCC 117046 || || ||| | | |||||| || | ||||||| | ||| ||||| || || Sbjct 95704 GCAATGTAGGAGCC--GGTGGCTCGGATGTTGTGGATGGAGAGACCGATACCGCCAGCAG 95647 Query 117047 ACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCT 117106 |||| || || | || || | |||| | ||||||| || ||||| ||||| ||| Sbjct 95646 ACTTGGAAATCAGAGCACAGGTCTTGAGGGTATCGTAGATGCCGTCGATGGAGTCGTCCT 95587 Query 117107 TATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGG 117166 | | || ||||| || |||||| || ||| || || ||||||||| |||||| Sbjct 95586 TCATGTTGACAAGGAAACACGACGACATCTGGGGCTGGGGGGTTCCAGCGTTGTAGAGGG 95527 Query 117167 TTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCAAGACAGAG 117225 | || | |||||| | || ||| | || ||||| | | ||||||||| | | | | Sbjct 95526 TGGGGGAAGCGTGGGT-AAAGTACTTCTGAGACATGTAGTTGTAGGTCTCGATGGCTCGG 95468 Query 117226 GGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGT 117279 | |||||| || ||||| || |||| || || ||||| | ||| | |||||| Sbjct 95467 GCAATGTCGTCACCGTGGATTCCGACGGACACTCGCATGATCATCTGCTGGGGT 95414 >seq3 Length=1361780 Score = 134 bits (148), Expect = 2e-26 Identities = 355/533 (67%), Gaps = 22/533 (4%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||| ||||||||||||||||| ||||| || | || ||| |||||||| Sbjct 15203 GTAGTCGGAGACTCGCTTCTCGAAGAAGTTGGTCTTACCGGCCAGAGAGATGTTCTCCAT 15144 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAAT-----TGTTGGC-ACCCCAATCTGTTTGAG 127344 || || || ||||| | ||||| | | ||||| | | ||| | || Sbjct 15143 GAAGTCGAAGGGGTTGGTGGAGTTGTAGACCTTGGTGTTGCCGAGAGCAACC------AG 15090 Query 127345 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 127404 || || || | ||| |||||||||||| |||| || | |||||| |||| || Sbjct 15089 CAGTCGGTCGGCGACAAACTCAATGTACTGGCACATGAGCTTGGCGTTCATGCCGAGCAG 15030 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 ||| || || ||||| | |||| ||| ||| ||| | ||||| || | || Sbjct 15029 ACCACAGGGCAGAGCGTCGGTCAGGAACTCCTGCTCGATGCCAACAGCCTCGACAATGAC 14970 Query 127465 GGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTT-GAAGAGTTCCACAG-CA 127522 | | | | | | | | |||| || | | || |||||| |||| || Sbjct 14969 GTCCTCGACAATCTTCTTGGAGGGTCGGTT-CTCGAGGTGAGAGAAGAGCAG-ACAGGCA 14912 Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582 || || ||| ||||||||||| || || ||||| || || |||||| || || ||| Sbjct 14911 AAGTCGGTGTGCAGACCCTCGTCTCGAGAAATGAGCTCGTTGGAGAAGGTGAGGCCGGGC 14852 Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642 |||||||| |||||||| | |||||| || | || ||||| ||||| ||||| ||| Sbjct 14851 ATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCTGAGAAAAAGATACCC 14792 Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACT--TTGTATCAAA-C 127699 || || || || |||| || |||||| |||||| ||||| | || ||| | Sbjct 14791 TCGACGGCGGCAAAGGCAATGAGCCGCTCGCCAAAGG---TGGACTCCTCGTCGGAAATC 14735 Query 127700 CACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 ||||| | ||||| | ||||| |||| ||| || |||| ||||| ||| || Sbjct 14734 CACTTGAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGC 14682 >seq1 Length=2434256 Score = 89.7 bits (98), Expect = 6e-13 Identities = 280/428 (65%), Gaps = 8/428 (2%) Strand=Plus/Plus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 || || |||||||| || || |||||||| |||||| | | | |||||| | | Sbjct 1212439 CGTAGATAGTACATGCCTGTTTTGAGCCCGGCCTTCCATCCGTGGAAATGCATCGCTGTG 1212498 Query 115618 AACTTGGAGAGTGTTGGACTTTC---CATGAAGAGGTTCATACTTTGGGATTGATCGATG 115674 | ||| | | || || | || |||||| | ||| | | || || || || ||| Sbjct 1212499 ATTTTGCCGTGGGT--GA-TATCGGGCATGAAAATGTTGAGAGACTGCGACTGGTCAATG 1212555 Query 115675 AAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTT 115734 || | | ||| ||||||||||||| || | | |||||| ||||| | || Sbjct 1212556 TAGGGAGCTCGAGCCGCCGCCATATCGATAATGTTGCGAGCCTTGATCTCCCAAGCGGTC 1212615 Query 115735 CTGTAGA-GGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGC 115793 || |||| || || | || | || ||||| | |||| | || || |||||| | Sbjct 1212616 CTATAGACGGCTC-TGATGTGTTCGGGGATCTGGGTGATACTCTGTATCGAGCCATTGTC 1212674 Query 115794 CTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCAC 115853 | || || | | ||||| |||| | ||| | || | ||| ||||||| | || Sbjct 1212675 GTGGATGATTCGGTTTTTCATCTCCTCGGTCCACATGCCCAGCTTGATGAGATCTTTCAT 1212734 Query 115854 GAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGT 115913 || | |||| || | |||||| || || || || | ||| || ||||||| Sbjct 1212735 CAGCCAATGGTTGATCACCAGAAACTCGCCTGCCTGGACTCGACGCAGGTAAATGTTGGA 1212794 Query 115914 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCAT 115973 |||||| |||||||| ||||| |||| |||| || || | ||||| ||||| ||||| Sbjct 1212795 CGTGTACGGCTCAAAACACTCGTTGTGGCCCAGAATCTGAGAAGTGGACGCTGTAGGCAT 1212854 Query 115974 GGGTGCCA 115981 || |||| Sbjct 1212855 AGGAGCCA 1212862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506862571040