Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3 251 1e-61 seq24 230 4e-55 seq1 138 2e-27 >seq3 Length=1361780 Score = 251 bits (278), Expect = 1e-61 Identities = 572/856 (67%), Gaps = 11/856 (1%) Strand=Plus/Minus Query 159628 CTTCTTGTATTGCGACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGA 159687 ||||| ||| | || || ||||||||| ||||||||||| || ||| || || Sbjct 15209 CTTCTGGTAGTCGGAGACTCGCTTCTCGAAGAAGTTGGTCTTACCGGCCAGAGAGATGTT 15150 Query 159688 TTCCATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAG 159747 |||||||| |||| ||||| | || ||| ||| | |||||||| |||| Sbjct 15149 CTCCATGAAGTCGAAGGGGTTGGTGGAGTTGTAGACCTTGGTGTTGCCGAGAGCAACCAG 15090 Query 159748 CAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAG 159807 || | ||| || ||||| || ||||| ||||| ||| ||| || || ||||| Sbjct 15089 CAGTCGGTCGGCGACAAACTCAATGTACTGGCACATGAGCTTGGCGTTCATGCCGAGCAG 15030 Query 159808 CCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAAT 159867 | | ||| || || || | ||| ||||||| ||| || | || || ||| ||||| Sbjct 15029 ACCACAGGGCAGAGCGTCGGTCAGGAACTCCTGCTCGATGCCAACAGCCTCG---ACAAT 14973 Query 159868 C---TGCGAGACACGTTCGTACCCCGGCTTGCCCAAAAT-GTGGTCCTTAAACAGGAGGC 159923 | | |||| || | | || | | | | ||| || || || | Sbjct 14972 GACGTCCTCGACAA--TCTT--CTTGGAGGGTCGGTTCTCGAGGTGAGAGAAGAGCAGAC 14917 Query 159924 ACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGC 159983 | ||||||||| |||||| |||||||| ||||| |||| ||||||||| | | |||||| Sbjct 14916 AGGCAAAGTCGGTGTGCAGACCCTCGTCTCGAGAAATGAGCTCGTTGGAGAAGGTGAGGC 14857 Query 159984 CCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGA 160043 | ||||||| || ||| |||||||| || |||| || |||| || ||||||| Sbjct 14856 CGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCTGAGAAAAAGA 14797 Query 160044 TCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGG 160103 | ||||| ||||| ||||| || | ||||| ||| ||||| | || | ||| Sbjct 14796 TACCCTCGACGGCGGCAAAGGCAATGAGCCGCTCGCCAAAGGTGGACTCCTCGTCGGAAA 14737 Query 160104 TCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAA 160163 ||||| | ||||| || |||||||| |||||| || ||| ||||| |||||| | Sbjct 14736 TCCACTTGAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCGTTGA 14677 Query 160164 ACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTT 160223 ||| || ||||||| |||||||| || | || ||| |||||| ||| Sbjct 14676 ACAGGTAGTTTCGCTCCTTGGGGTCCTTGATGTATGTGTCGATGAGCAGCGAGTAGGTTT 14617 Query 160224 CTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACT 160283 | | ||| | || || || ||||| ||| |||||| | | ||||| || || Sbjct 14616 CCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGAGCCT 14557 Query 160284 GCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAA 160343 | ||||| | ||| | | |||| || | || || | ||||||| ||| |||| Sbjct 14556 GGACCTCGCCGGAGAATCGCTCCACCAGGTTCTCGTTGACGATTCCGTCGGAGGCAGCAA 14497 Query 160344 AGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGT 160403 |||| |||| |||||||||||||| || |||||| |||||||||| || ||||||| Sbjct 14496 AGAAGGCCAGAACGTGAGAGATGAAGAATCGCTCGTCGTTGTTGAGTCGGTTCTCCCAGT 14437 Query 160404 GTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTT 160463 || ||| | | | | ||| | ||| || || |||| || ||||| ||| | | Sbjct 14436 CGCCCATGTCCTTGCCGAGATCGATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCT 14377 Query 160464 TGTACATGGCCCAGAT 160479 ||||||| |||||| Sbjct 14376 TGTACATCTGCCAGAT 14361 >seq24 Length=170883 Score = 230 bits (254), Expect = 4e-55 Identities = 346/485 (71%), Gaps = 10/485 (2%) Strand=Plus/Minus Query 203849 GTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTTTAGG 203908 |||||||| |||| | | |||| | || ||| ||| |||||||| || ||||| || Sbjct 97177 GTGAACTGGATGGGGGCGGCAGCAGCCATGGTTCGCAGGTAGTACATACCAGTCTTGAGA 97118 Query 203909 CCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATG 203968 ||||||| ||| ||||| | ||||||||| | || |||| || | ||||||| ||| Sbjct 97117 CCCTTCTTCCAGCCGTAGAAGTGCATGGAGGTGAGCTTGCCCATGGTGGGGTCCTTGATG 97058 Query 203969 TGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATA 204028 |||||||| || |||||| ||||| ||||| |||| || || || ||||| | ||| Sbjct 97057 TGAATGTTGAGGGACTGGGACTGGTCAATGAAGGGCGATCGGTCGGCAGCCATCTCGATG 96998 Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGTTGAGGCACA 204088 || ||||||||||||||||||||| || | ||| ||| || | | || || | Sbjct 96997 ATTCGCTTCTGCGAAATCTCCCACACGGTTCGGTACAGGTCCTTGATCTCCTGGGGGATG 96938 Query 204089 TCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTC---TCATCCTCGTCTCCTC 204144 | | | || ||| | || ||||||||||||| | || || || | ||||| | Sbjct 96937 T-TGGGGATGTTCTGCACGGATCCGTTGTCGGCCACGATTCGGTTCTTCATGGTCTCAT- 96880 Query 204145 CCCCCACATGCCCAACCT-GATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGT 204203 ||||| | ||||||| | ||| ||| | ||| |||||||| ||||| || | Sbjct 96879 --TCCACA-GACCAACCTCAACCAGGTCCTTGAGCAGCCAGGGGTTGACAATCTGGAACT 96823 Query 204204 CTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGT 204263 | || | ||||| | ||| | | | | |||| |||| | || ||||| ||||||| Sbjct 96822 CGCCAGCAAGCACTCGTCGAGAGTAAATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGA 96763 Query 204264 TGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCA 204323 ||||| |||||||| |||| ||| |||||||||||||| | ||||| ||||| |||| Sbjct 96762 AGCCGAGAATCTGAGAGGTGGAGGCGGTGGGCATGGGAGCAACCAGCAGCGAGTTTCGCA 96703 Query 204324 CACCG 204328 |||| Sbjct 96702 TACCG 96698 Score = 165 bits (182), Expect = 1e-35 Identities = 453/680 (67%), Gaps = 18/680 (3%) Strand=Plus/Minus Query 204931 CTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTC 204990 || |||||| ||||| ||||| || | |||||||| | |||||| || | ||| ||| Sbjct 96170 CTTCTGGTTGGACTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTACCGGACTC 96111 Query 204991 CATCTGAGA-TCGCAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTCACGTACA 205049 |||| | ||| ||||||||| ||||| | | || | || ||| || Sbjct 96110 GGTCTGGCAGTCG-AGAATGTGGTACCACAGCTTCTGGGCGGGGA--TGGTTCGTCGACC 96054 Query 205050 TC--CCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCAT 205107 || || | |||||| | ||||||| | || || ||||| ||||| Sbjct 96053 TCGGCCCTCCTTCTCGTACTGCTCGTACAGCTGCTTGAACTCGTCGCCGTAGACGTCGTC 95994 Query 205108 CAGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTC---ACCCT 205164 ||| || ||||| | ||||| ||||| |||| |||| || | ||| | | || | Sbjct 95993 CAGACCGGGACACTCGTTGGGGCACATGAGAGTCCAC-TCGG--CGTTCTGCTCGACTCG 95937 Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224 |||||| ||||| ||| |||||||||| | ||||| || ||||| | ||| | || Sbjct 95936 CTCCATGAACAGATCGGGGATCCACAGGGCCAGGAACAGGTCTCGGGCTCGAATCTCCTC 95877 Query 205225 GTCTCCAAGGTTCTTTTTCAAGTC-CAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCT 205282 | ||| |||||||| || || ||| || || | |||||| ||||||| ||||| Sbjct 95876 CTTTCCGTGGTTCTTTCGCAGCTCGCAG--AACTCGAAGATGTCGTCGTGCCAGGGCTCA 95819 Query 205283 AACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATC 205342 | ||| ||| | || || || | |||||| || ||||||||||| || | | Sbjct 95818 AGGTACATGGCAAAGGCTCCGGGTCGCTTGTTGCCTCCCTGGTCCACGTATCGGGCAGTG 95759 Query 205343 GCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATG 205402 |||| | || |||||||| ||||| | |||||||| ||| ||||| |||| | ||| Sbjct 95758 TTGTTGTAGACACGCAGCATGGGCACGATACCGTTGGAGGTTCCGTTGGTGCCGGCAATG 95699 Query 205403 GCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCG 205462 ||||| || | | |||| ||||| || || ||||||| | |||||| Sbjct 95698 TAGGAGCCGGTGGCTCGGATGTTGTGGATGGAGAGACCGATACCGCCAGCAGACTTGGAA 95639 Query 205463 ATCTGGGCGCA-CTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGT 205521 ||| | || || ||||| || || ||||||||| ||||||| |||||| || | Sbjct 95638 ATCAGAGCACAGGTCTTG-AGGGTATCGTAGATGCCGTCGATGGAGTCGTCCTTCATGTT 95580 Query 205522 CACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCT 205581 || || | ||||| | || || || | ||| || |||| | |||| |||||| Sbjct 95579 GACAAGGAAACACGACGACATCTGGGGCTGGGGGGTTCCAGCGTTGTAGAGGGTGGGGGA 95520 Query 205582 GGCGTGGCTGAAGCGCTTCT 205601 |||||| | ||| ||||| Sbjct 95519 AGCGTGGGTAAAGTACTTCT 95500 >seq1 Length=2434256 Score = 138 bits (152), Expect = 2e-27 Identities = 495/765 (65%), Gaps = 18/765 (2%) Strand=Plus/Plus Query 203836 CGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACAT 203895 || ||| || || |||||||||||||| | | ||||| | | ||||||||||| Sbjct 1212393 CGACTTATCAACGGTGAACTGAATGGCATGGGCAGCAGGTGGAGTACGTAGATAGTACAT 1212452 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||| || || || || || ||| |||| | ||||| | | | ||||| ||| Sbjct 1212453 GCCTGTTTTGAGCCCGGCCTTCCATCCGTGGAAATGCATCGCTGTGATTTTGC---CGTG 1212509 Query 203956 GGGG---TCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATC 204012 || | |||| |||| |||||| |||||||| ||||| ||| | || || ||| | Sbjct 1212510 GGTGATATCGGGCATGAAAATGTTGAGAGACTGCGACTGGTCAATGTAGGGAGCTCGAGC 1212569 Query 204013 TGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCT 204072 || ||||||| ||||||| | | |||||||| | ||| | | ||| |||| Sbjct 1212570 CGCCGCCATATCGATAATGTTGCGAGCCTTGATCTCCCAAGCGGTCCTATAGACGGCTCT 1212629 Query 204073 GGTGTGTTGAGGCACATCT---TCCCACGTCCTGATCGAGCCGTTGTCGGCCATCAGTCT 204129 | |||||| || | ||| | || || |||||||| |||||| || | || Sbjct 1212630 GATGTGTTCGGGGA--TCTGGGTGATAC-TCTGTATCGAGCCATTGTCGTGGATGATTCG 1212686 Query 204130 CATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTT 204189 | || ||||||| ||||||||||| | |||| || || || ||| |||| Sbjct 1212687 GTTTTTCATCTCCTCGGTCCACATGCCCAGCTTGATGAGATCTTTCATCAGCCAATGGTT 1212746 Query 204190 GATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTC 204249 ||| | | |||| || || | | | || | || | | | |||| ||| | || || Sbjct 1212747 GATCACCAGAAACTCGCCTGCCTGGACTCGACGCAGGTAAATGTTGGACGTGTACGGCTC 1212806 Query 204250 GAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAG 204309 || |||||||| ||| | |||||||| ||| || || ||||| ||||||| || Sbjct 1212807 AAAACACTCGTTGTGGCCCAGAATCTGAGAAGTGGACGCTGTAGGCATAGGAGCCACTAG 1212866 Query 204310 CAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAG-AGAGGTCCAGTCGTGCA 204368 || ||||| |||| ||||| ||| || | | ||| || ||| | ||| || || Sbjct 1212867 CAACGAGTTTCGCATACCGTGTTTGGCGAGCTTCGACTTTAGCAGA-GCCCAATCCCACA 1212925 Query 204369 TCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGC 204428 | ||| || | ||||| || ||||| || | || || || | || |||| Sbjct 1212926 GGTCTGAGGGGGTCTTGTTCCACAAATCAAACTGCAACTTACCCTGGCTAGCAGGACTGC 1212985 Query 204429 CCTTGTACGTCGGATAAGG--CTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGC 204486 ||| ||| ||| || || || | || | ||||||| | || || | ||| Sbjct 1212986 CCTCGTAGGTCTCGTAGGGTCCTAGT--TCAGCAGCCAGCTCGATGGAAGCCTCGCAGGC 1213043 Query 204487 GTGATAGTACATGGTCTCAAAGATCTGAACGTTTAATCTGGCGGCCTCCGTTCCGTCAAA 204546 | || ||| || || || || || ||||||| || ||| ||||| | |||| | Sbjct 1213044 GGCATGGTAGATTGTTTCGAAAATGAGAACGTTCAACTCGGCAGCCTCGAGACTGTCATA 1213103 Query 204547 CGCCAGACCCAGCATGGCAAACACGTCCGCCAAGCCCTGCACTCC 204591 | || | |||| | ||||||||| |||| ||||| || || Sbjct 1213104 GGGCATTCGCAGCTTCATAAACACGTCAGCCAGACCCTGGACACC 1213148 Score = 93.3 bits (102), Expect = 7e-14 Identities = 395/619 (64%), Gaps = 4/619 (1%) Strand=Plus/Plus Query 204928 ATGCTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTT 204987 || || |||||| || || ||| ||| ||| || |||| ||||||||| ||| | Sbjct 1213428 ATTCTTCTGGTTGGATTTCGCGTTGCAGCTGTCTTTATACAGCATGAACGGGCCTCCAGT 1213487 Query 204988 CTCCATCTGAGATCGCAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTCACGTA 205047 || ||||| | |||||| | ||| || | || || | |||| ||| Sbjct 1213488 TTCAATCTGGCTTGTCAGAATCGCCTTGAACAGCTCCTGGGCGTCGATTTGCGAGTTGTA 1213547 Query 205048 CATCCCTTGAGACTCGTATTTTGTGTACA-GCGCCACAAAGTCAGAACCGTACACGTCCA 205106 || | | |||||||||| | | |||| ||| ||| |||| || | | ||| Sbjct 1213548 CAGCTTTCGAGACTCGTACTCTTCGTACTTGCGGTCGAAA-TCAGGTCCCCAGATGTCTG 1213606 Query 205107 TCAGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTC-ACCCTC 205165 ||| || ||| ||||||||||| | || ||||| ||| | |||||| || ||| Sbjct 1213607 CCAGTCCGGGAGCCTTTTTGGGACAGAAAAGCGACCATTTCT-CGCCTCTTTCGACTCTC 1213665 Query 205166 TCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCG 205225 | ||| ||||| ||| | ||| | ||||||| |||||||| || || || | ||| Sbjct 1213666 TTCATGAACAGATCGGGAACCCATAATGCGTAAAAGAGATCACGTGCTCTGTTTTCCTCG 1213725 Query 205226 TCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAAC 205285 |||| |||| || || | || || || ||| || || ||||| ||||| || Sbjct 1213726 GCTCCGTGGTTTTTGCGCAGATTCAAGAAATCCAAAATATCCGCATGCCATGGCTCCAAG 1213785 Query 205286 CACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCG 205345 | || || | || || || | |||||| || || |||||||| | | | Sbjct 1213786 TAGACTGCAAACGCTCCAGGACGCTTGTTGCCGCCTTGGTCCACGTATCTGGCTGTGTTA 1213845 Query 205346 TTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCC 205405 ||||| ||||| ||||| || || | || || | || | | || ||||| Sbjct 1213846 TTGAACACTCGGAGCATGGGAACAATGCCTGAGGATTTTCCCTGAGAGCCTGTGATGATG 1213905 Query 205406 GAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATC 205465 | ||| | ||| || | |||| ||| | || || || || | ||| | || Sbjct 1213906 GTGCCCTTAGCTCTGATGTTGTGGATATGCAGACCTATGCCTCCTGCGGTCTTTGAAATT 1213965 Query 205466 TGGGCGCACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACC 205525 ||||||||| || |||||| ||||||||| ||||||| || || || | ||| Sbjct 1213966 TGGGCGCACGTTTTGAGAGTGTCGTAGATGCCGTCGATGGAGTCTTCGCTCATGGCGACC 1214025 Query 205526 AGATAGCACGAAGCCAGCT 205544 ||| |||| || | |||| Sbjct 1214026 AGAAAGCAGGACGATAGCT 1214044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154762664640