Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01]
44 sequences; 20,877,144 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq4 143 6e-29
seq3 134 3e-26
seq14 120 7e-22
>seq4
Length=1325655
Score = 143 bits (158), Expect = 6e-29
Identities = 163/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
||| |||| ||| || || |||||||| |||||||| |||| ||||||||||| | ||
Sbjct 386807 TCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGT 386748
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
| || || || |||||||| ||||||||||| || |||||||||||||| ||||||
Sbjct 386747 TCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCC 386688
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
|| ||||| ||||| ||| ||| |||| |||||| | | || || || |
Sbjct 386687 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAG 386628
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| |||||||| || || || || ||||| || ||
Sbjct 386627 GGTGATAGTCTTACCGGTAAGGGTCTTGACAAAGATCTG 386589
>seq3
Length=1361780
Score = 134 bits (148), Expect = 3e-26
Identities = 161/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
||| |||| ||| || || |||||||| |||||||| |||| ||||||||||| | |||
Sbjct 557866 TCGGAGTCGCAGAACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGT 557807
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
| || || || |||||||| |||||||| || || |||||||||||||| |||||
Sbjct 557806 TCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGGATTCC 557747
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
|| ||||| ||||| ||| ||| || | |||||| | | || || || |
Sbjct 557746 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACCTCGAG 557687
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || || || || || ||||| |||||
Sbjct 557686 GGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTG 557648
>seq14
Length=605277
Score = 120 bits (132), Expect = 7e-22
Identities = 158/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
||| |||| || || || |||||||| |||||||| |||| ||||||||||| | ||
Sbjct 299714 TCGGAGTCGGAGAACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGT 299773
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
| || || || ||||||||||| || || || || |||||||||||||| ||||||
Sbjct 299774 TCGGCCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCC 299833
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
|| ||||||||||| ||| || || | |||||| | | || || || |
Sbjct 299834 CTCCTTGTCCTGAATCTTAGACTTGACATTGTCAATGGTGTCGGAGGACTCAACCTCGAG 299893
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || || || || || ||||| || ||
Sbjct 299894 AGTGATGGTCTTTCCAGTCAGGGTCTTGACAAAGATCTG 299932
Score = 116 bits (128), Expect = 9e-21
Identities = 123/162 (76%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
||| |||| || |||||||||||||| || ||||| |||| ||||||||| | | ||
Sbjct 298768 TCGGAGTCGGAGCACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGT 298827
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
| || || ||||||||||| ||||||||||| || |||||||||||||| || ||
Sbjct 298828 TCGACCGTCCTCCAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATACC 298887
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569
|| ||||||||||| ||| ||| |||| ||||||
Sbjct 298888 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTC 298929
Score = 100 bits (110), Expect = 7e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
|||||||| || || || || || || |||||||| |||| |||||| |||| | |||
Sbjct 299942 TCGAAGTCGGAGAACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGAGAGAGT 300001
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
| ||||| || ||||||||||| ||||| || || |||||||||||||| ||| ||
Sbjct 300002 TCGACCATCCTCAAGCTGCTTTCCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATACC 300061
Query 199528 TTCTCGCTCCTGAATCTT 199545
|| ||||| |||||
Sbjct 300062 CTCCTTGTCCTGGATCTT 300079
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178920935382948
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |