Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq4 143 6e-29 seq3 134 3e-26 seq14 120 7e-22 >seq4 Length=1325655 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| |||| ||| || || |||||||| |||||||| |||| ||||||||||| | || Sbjct 386807 TCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGT 386748 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || || || |||||||| ||||||||||| || |||||||||||||| |||||| Sbjct 386747 TCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCC 386688 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| ||||| ||| ||| |||| |||||| | | || || || | Sbjct 386687 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAG 386628 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||| || || || || ||||| || || Sbjct 386627 GGTGATAGTCTTACCGGTAAGGGTCTTGACAAAGATCTG 386589 >seq3 Length=1361780 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| |||| ||| || || |||||||| |||||||| |||| ||||||||||| | ||| Sbjct 557866 TCGGAGTCGCAGAACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGT 557807 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || || || |||||||| |||||||| || || |||||||||||||| ||||| Sbjct 557806 TCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGGATTCC 557747 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| ||||| ||| ||| || | |||||| | | || || || | Sbjct 557746 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACCTCGAG 557687 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || || ||||| ||||| Sbjct 557686 GGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTG 557648 >seq14 Length=605277 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| |||| || || || |||||||| |||||||| |||| ||||||||||| | || Sbjct 299714 TCGGAGTCGGAGAACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGT 299773 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || || || ||||||||||| || || || || |||||||||||||| |||||| Sbjct 299774 TCGGCCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCC 299833 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||||||||| ||| || || | |||||| | | || || || | Sbjct 299834 CTCCTTGTCCTGAATCTTAGACTTGACATTGTCAATGGTGTCGGAGGACTCAACCTCGAG 299893 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || || ||||| || || Sbjct 299894 AGTGATGGTCTTTCCAGTCAGGGTCTTGACAAAGATCTG 299932 Score = 116 bits (128), Expect = 9e-21 Identities = 123/162 (76%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| |||| || |||||||||||||| || ||||| |||| ||||||||| | | || Sbjct 298768 TCGGAGTCGGAGCACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGT 298827 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || || ||||||||||| ||||||||||| || |||||||||||||| || || Sbjct 298828 TCGACCGTCCTCCAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATACC 298887 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569 || ||||||||||| ||| ||| |||| |||||| Sbjct 298888 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTC 298929 Score = 100 bits (110), Expect = 7e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||||| || || || || || || |||||||| |||| |||||| |||| | ||| Sbjct 299942 TCGAAGTCGGAGAACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGAGAGAGT 300001 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||| || ||||||||||| ||||| || || |||||||||||||| ||| || Sbjct 300002 TCGACCATCCTCAAGCTGCTTTCCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATACC 300061 Query 199528 TTCTCGCTCCTGAATCTT 199545 || ||||| ||||| Sbjct 300062 CTCCTTGTCCTGGATCTT 300079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178920935382948