Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq3 145 9e-30 seq4 125 8e-24 seq14 111 2e-19 >seq3 Length=1361780 Score = 145 bits (160), Expect = 9e-30 Identities = 170/227 (75%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||||| | |||| |||||||| | || |||||| ||||| |||||||| || Sbjct 557871 CCTCCTCGGAGTCGCAGAACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 557812 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || |||| |||||||||||||||||||| |||| ||||||||||| | || Sbjct 557811 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGG 557752 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCG-TGTCGCTCGATTCCAC 46545 | | |||||||||| |||||| ||||| ||| | || | |||| || ||||| Sbjct 557751 ATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCAATGGTGTCAGAGGACTCCAC 557693 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCA 46592 || | ||||| || ||||| || || || || ||||||||||||| Sbjct 557692 CTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 557646 >seq4 Length=1325655 Score = 125 bits (138), Expect = 8e-24 Identities = 160/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| || ||||| | || |||||| ||||| |||||||| || || || || || Sbjct 386800 CGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCG 386741 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||||||||| |||||||| || | ||||||||||| | || | | ||||||| Sbjct 386740 TCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTG 386681 Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||| ||||| ||| | | | |||||| || ||||| || | ||||| Sbjct 386680 TCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 386622 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTT 46595 || || || || || || || |||||||| ||||||| Sbjct 386621 AGTCTTACCGGTAAGGGTCTTGACAAAGATCTGCATTT 386584 >seq14 Length=605277 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||||||| | || |||||| ||||| |||||||| || || || || |||| || Sbjct 299727 ACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCGTCCTCA 299786 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || || || |||| ||||||||||| | || | | |||||||||| Sbjct 299787 AGCTGCTTTCCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGA 299846 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| | | | |||||| || || || || | |||||||| || Sbjct 299847 ATCTTAGACTTGACATTGTCAATGGTGTCGGAGGACTCAACCTCGAGAGTGATGGTCTTT 299906 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| || || |||||||| ||||| Sbjct 299907 CCAGTCAGGGTCTTGACAAAGATCTGCAT 299935 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||||||| | ||| |||||| ||||| ||||| || || ||||| || | || || Sbjct 299955 ACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGAGAGAGTTCGACCATCCTCA 300014 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || ||||| |||| ||||||||||| | || | | |||||||||| | Sbjct 300015 AGCTGCTTTCCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGG 300074 Query 46505 ATCTTCTTCTTGA 46517 ||||| ||||| Sbjct 300075 ATCTTGGACTTGA 300087 Score = 86.0 bits (94), Expect = 7e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| || || || |||| || |||||||| |||||||| Sbjct 298799 TCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGACCGTCCTCCAGCTGCTTACCGGCGAAG 298858 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 || | ||||||||||| | || | | |||||||||| ||||| ||||| Sbjct 298859 ATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGAATCTTGGACTTGA 298913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238089118880