Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01]
44 sequences; 20,877,144 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq3 369 4e-97
seq14 113 5e-20
seq4 111 2e-19
>seq3
Length=1361780
Score = 369 bits (408), Expect = 4e-97
Identities = 612/876 (70%), Gaps = 11/876 (1%)
Strand=Plus/Minus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684
||||| || || || || || || ||| || ||| | ||| || || |||||||||
Sbjct 15187 TTCTCGAAGAAGTTGGTCTTACCGGCCAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTG 15128
Query 132685 GCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCG 132744
| | ||||||| ||||||| | || | || ||||| | |||||| || |||||
Sbjct 15127 GTGGAGTTGTAGACCTTGGTGTTGCCGAGAGCAACCAGCAGTCGGTCGGCGACAAACTCA 15068
Query 132745 ATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGACGCACCGG-CAGCGCTTCGG 132802
||||| || ||||| | || || | | | || ||||||| ||| || ||| || ||||
Sbjct 15067 ATGTACTGGCACATGAGCTTGGCGTTCATG-CCGAGCAGAC-CACAGGGCAGAGCGTCGG 15010
Query 132803 TGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGC 132862
| || || ||||||||| | || || ||| | || ||| || | | |
Sbjct 15009 TCAGGAACTCCTGCTCGATGCCAACAGCCTCGACAATGACGTCCTCGACAATCTTCTTGG 14950
Query 132863 TCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGT 132922
|| || | | | | || ||| | || || ||||||||| |||| |||||||
Sbjct 14949 AGGGTCGGTTCTCGAGGTGAGAGAAGAGCAGACAGGCAAAGTCGGTGTGCAGACCCTCGT 14890
Query 132923 CCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCC 132982
| | |||||||| |||||| ||| || | |||||||||||| || || || |||||||
Sbjct 14889 CTCGAGAAATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGACCTCGCTTCTTGAGCC 14830
Query 132983 AAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCA 133042
| || |||| ||||||| ||| || || |||| ||||||||||| || || || | |
Sbjct 14829 AGAAGATGGAGGCGAAAGAGCCTGAGAAAAAGATACCCTCGACGGCGGCAAAGGCAATGA 14770
Query 133043 GGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTT 133102
| |||||||| || |||| || | | || ||||| || ||||| |||||||| |
Sbjct 14769 GCCGCTCGCCAAAGGTGGACTCCTCGTCGGAAATCCACTTGAGAGCCCAGTCGGCCTTCT 14710
Query 133103 CTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAAC 133162
|||| ||| || || || ||||||||||| ||| | | |||||| || | || |
Sbjct 14709 TCTTGATGCAGGGGATGGTCTCGATGGCGTTGAAC--AGGTAGTTTCGCTCCTTGGGGTC 14652
Query 133163 --GCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGAT 133220
| ||| ||||||||||| ||| || |||||||||| | ||||||||| |||
Sbjct 14651 CTTGATGTATGTGTCGATGAGCAGCGAGTAGGTTTCCGAGTGGATGTTCTCCATCATGAT 14592
Query 133221 TTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGAC 133280
|| |||||||| |||||| |||||| |||| || || | ||| ||||| ||
Sbjct 14591 CTGGAAGCCGTAGAAGCACTTGGCCTCGGGAGCCTGGACCTCGCCGGAGAATCGCTCCAC 14532
Query 133281 CAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAA 133340
||| || ||||||||||| |||||| ||| || || |||||||| ||||| ||||||
Sbjct 14531 CAGGTTCTCGTTGACGATTCCGTCGGAGGCAGCAAAGAAGGCCAGAACGTGAGAGATGAA 14472
Query 133341 ATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCAC 133397
||||||| || ||| | || ||||||||||| | |||||||| || || |
Sbjct 14471 GAATCGCTCGTCGTTGTTGAGTCGGTTCTCCCAGTCGCCCATGTCCTTGCCGAGATCGAT 14412
Query 133398 CTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATA 133457
|||||| | ||||| || || ||||| || || |||||||| ||| || || ||
Sbjct 14411 CTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATCTGCCAGATCTCATGGTA 14352
Query 133458 TTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTC 133493
|| ||||| || | ||||||||| ||| ||| ||
Sbjct 14351 CTGGATGGGGAAGAGCACAAACCGTCGGCCGTTCTC 14316
Score = 123 bits (136), Expect = 2e-23
Identities = 158/215 (73%), Gaps = 2/215 (1%)
Strand=Plus/Plus
Query 38245 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCG 38304
||||||| || || || || || || ||||| || |||||| |||| || ||| || | |
Sbjct 557646 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACTATCACCCTCGAGGTGGAGTCCTCTG 557705
Query 38305 ACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
||| | | | |||| | || || |||| ||||| |||||||| ||| | |||||
Sbjct 557706 ACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAG 557764
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || |||| ||| ||||| ||||| || |||| || || || |||||||||
Sbjct 557765 CAGCGACTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTTTCTGACTACAAC 557824
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| ||||| | || || ||| |||| |||||
Sbjct 557825 ATCCAGAAGGAGTCCACTCTCCATCTGGTTCTGCG 557859
>seq14
Length=605277
Score = 113 bits (124), Expect = 5e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || || || || || |||||||| |||| || ||| || ||
Sbjct 299935 ATGCAGATCTTTGTCAAGACCCTGACTGGAAAGACCATCACTCTCGAGGTTGAGTCCTCC 299876
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || || || | ||||| |||||||||||| | |||||
Sbjct 299875 GACACCATTGACAATGTCAAGTCTAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAG 299816
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || |||| || || || ||||| || |||| || |||||| |||||||||
Sbjct 299815 CAGCGACTGATTTTTGCTGGAAAGCAGCTTGAGGACGGCCGAACCCTCTCTGACTACAAC 299756
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| ||||| | || || ||| |||| || ||
Sbjct 299755 ATCCAGAAGGAGTCCACTCTCCATCTGGTTCTCCG 299721
Score = 93.3 bits (102), Expect = 4e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||| ||||| || ||| | ||||| ||||| || || | ||| || || ||||||||
Sbjct 298896 GACAAGGAGGGTATCCCCCCGGACCAGCAGCGACTTATCTTCGCCGGTAAGCAGCTGGAG 298837
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|||| || ||||| ||||||||||||||| |||||| | || || || | |||||
Sbjct 298836 GACGGTCGAACCCTTTCCGACTACAACATCCAGAAGGAATCCACTCTCCACCTTGTGCTC 298777
Query 38457 CGTTTGAGAGGCGGCC 38472
|| | |||| ||||
Sbjct 298776 CGACTCCGAGGTGGCC 298761
Score = 84.2 bits (92), Expect = 2e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| ||||| |||||| | ||||| ||||| || |||| ||| || ||
Sbjct 300079 AAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAGCAGCGACTGATTTTCGCTGGAAAG 300020
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
||||| || || | || || ||| || ||||||||||| ||||| | || || |||
Sbjct 300019 CAGCTTGAGGATGGTCGAACTCTCTCTGATTACAACATCCAGAAGGAGTCTACCCTTCAT 299960
Query 38448 TTGGTGCTGCG 38458
|||| || ||
Sbjct 299959 CTGGTTCTCCG 299949
>seq4
Length=1325655
Score = 111 bits (122), Expect = 2e-19
Identities = 157/218 (72%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 38242 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCA 38301
||||||| || || || || || || || || || || |||||| | || || ||| |
Sbjct 386584 AAATGCAGATCTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTGGAGTCTT 386643
Query 38302 CCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
|||||| | | | |||| | || || |||| ||||| |||||||||||| | |||
Sbjct 386644 CCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGAC 386702
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||||| || || | ||| || || ||||| || |||| || ||||| ||||||
Sbjct 386703 CAGCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTAC 386762
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||||||| ||||| | || || ||| | || |||||
Sbjct 386763 AACATCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCG 386800
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500172524904960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |