Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3 369 4e-97 seq14 113 5e-20 seq4 111 2e-19 >seq3 Length=1361780 Score = 369 bits (408), Expect = 4e-97 Identities = 612/876 (70%), Gaps = 11/876 (1%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || || ||| || ||| | ||| || || ||||||||| Sbjct 15187 TTCTCGAAGAAGTTGGTCTTACCGGCCAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTG 15128 Query 132685 GCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCG 132744 | | ||||||| ||||||| | || | || ||||| | |||||| || ||||| Sbjct 15127 GTGGAGTTGTAGACCTTGGTGTTGCCGAGAGCAACCAGCAGTCGGTCGGCGACAAACTCA 15068 Query 132745 ATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGACGCACCGG-CAGCGCTTCGG 132802 ||||| || ||||| | || || | | | || ||||||| ||| || ||| || |||| Sbjct 15067 ATGTACTGGCACATGAGCTTGGCGTTCATG-CCGAGCAGAC-CACAGGGCAGAGCGTCGG 15010 Query 132803 TGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGC 132862 | || || ||||||||| | || || ||| | || ||| || | | | Sbjct 15009 TCAGGAACTCCTGCTCGATGCCAACAGCCTCGACAATGACGTCCTCGACAATCTTCTTGG 14950 Query 132863 TCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGT 132922 || || | | | | || ||| | || || ||||||||| |||| ||||||| Sbjct 14949 AGGGTCGGTTCTCGAGGTGAGAGAAGAGCAGACAGGCAAAGTCGGTGTGCAGACCCTCGT 14890 Query 132923 CCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCC 132982 | | |||||||| |||||| ||| || | |||||||||||| || || || ||||||| Sbjct 14889 CTCGAGAAATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGACCTCGCTTCTTGAGCC 14830 Query 132983 AAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCA 133042 | || |||| ||||||| ||| || || |||| ||||||||||| || || || | | Sbjct 14829 AGAAGATGGAGGCGAAAGAGCCTGAGAAAAAGATACCCTCGACGGCGGCAAAGGCAATGA 14770 Query 133043 GGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTT 133102 | |||||||| || |||| || | | || ||||| || ||||| |||||||| | Sbjct 14769 GCCGCTCGCCAAAGGTGGACTCCTCGTCGGAAATCCACTTGAGAGCCCAGTCGGCCTTCT 14710 Query 133103 CTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAAC 133162 |||| ||| || || || ||||||||||| ||| | | |||||| || | || | Sbjct 14709 TCTTGATGCAGGGGATGGTCTCGATGGCGTTGAAC--AGGTAGTTTCGCTCCTTGGGGTC 14652 Query 133163 --GCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGAT 133220 | ||| ||||||||||| ||| || |||||||||| | ||||||||| ||| Sbjct 14651 CTTGATGTATGTGTCGATGAGCAGCGAGTAGGTTTCCGAGTGGATGTTCTCCATCATGAT 14592 Query 133221 TTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGAC 133280 || |||||||| |||||| |||||| |||| || || | ||| ||||| || Sbjct 14591 CTGGAAGCCGTAGAAGCACTTGGCCTCGGGAGCCTGGACCTCGCCGGAGAATCGCTCCAC 14532 Query 133281 CAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAA 133340 ||| || ||||||||||| |||||| ||| || || |||||||| ||||| |||||| Sbjct 14531 CAGGTTCTCGTTGACGATTCCGTCGGAGGCAGCAAAGAAGGCCAGAACGTGAGAGATGAA 14472 Query 133341 ATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCAC 133397 ||||||| || ||| | || ||||||||||| | |||||||| || || | Sbjct 14471 GAATCGCTCGTCGTTGTTGAGTCGGTTCTCCCAGTCGCCCATGTCCTTGCCGAGATCGAT 14412 Query 133398 CTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATA 133457 |||||| | ||||| || || ||||| || || |||||||| ||| || || || Sbjct 14411 CTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATCTGCCAGATCTCATGGTA 14352 Query 133458 TTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTC 133493 || ||||| || | ||||||||| ||| ||| || Sbjct 14351 CTGGATGGGGAAGAGCACAAACCGTCGGCCGTTCTC 14316 Score = 123 bits (136), Expect = 2e-23 Identities = 158/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 38245 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCG 38304 ||||||| || || || || || || ||||| || |||||| |||| || ||| || | | Sbjct 557646 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACTATCACCCTCGAGGTGGAGTCCTCTG 557705 Query 38305 ACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | | | |||| | || || |||| ||||| |||||||| ||| | ||||| Sbjct 557706 ACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAG 557764 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||| ||||| ||||| || |||| || || || ||||||||| Sbjct 557765 CAGCGACTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTTTCTGACTACAAC 557824 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || ||| |||| ||||| Sbjct 557825 ATCCAGAAGGAGTCCACTCTCCATCTGGTTCTGCG 557859 >seq14 Length=605277 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || || || |||||||| |||| || ||| || || Sbjct 299935 ATGCAGATCTTTGTCAAGACCCTGACTGGAAAGACCATCACTCTCGAGGTTGAGTCCTCC 299876 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || || | ||||| |||||||||||| | ||||| Sbjct 299875 GACACCATTGACAATGTCAAGTCTAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAG 299816 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| || || || ||||| || |||| || |||||| ||||||||| Sbjct 299815 CAGCGACTGATTTTTGCTGGAAAGCAGCTTGAGGACGGCCGAACCCTCTCTGACTACAAC 299756 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || ||| |||| || || Sbjct 299755 ATCCAGAAGGAGTCCACTCTCCATCTGGTTCTCCG 299721 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| || ||| | ||||| ||||| || || | ||| || || |||||||| Sbjct 298896 GACAAGGAGGGTATCCCCCCGGACCAGCAGCGACTTATCTTCGCCGGTAAGCAGCTGGAG 298837 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| || ||||| ||||||||||||||| |||||| | || || || | ||||| Sbjct 298836 GACGGTCGAACCCTTTCCGACTACAACATCCAGAAGGAATCCACTCTCCACCTTGTGCTC 298777 Query 38457 CGTTTGAGAGGCGGCC 38472 || | |||| |||| Sbjct 298776 CGACTCCGAGGTGGCC 298761 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| |||||| | ||||| ||||| || |||| ||| || || Sbjct 300079 AAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAGCAGCGACTGATTTTCGCTGGAAAG 300020 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || || | || || ||| || ||||||||||| ||||| | || || ||| Sbjct 300019 CAGCTTGAGGATGGTCGAACTCTCTCTGATTACAACATCCAGAAGGAGTCTACCCTTCAT 299960 Query 38448 TTGGTGCTGCG 38458 |||| || || Sbjct 299959 CTGGTTCTCCG 299949 >seq4 Length=1325655 Score = 111 bits (122), Expect = 2e-19 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 38242 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCA 38301 ||||||| || || || || || || || || || || |||||| | || || ||| | Sbjct 386584 AAATGCAGATCTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTGGAGTCTT 386643 Query 38302 CCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | | | |||| | || || |||| ||||| |||||||||||| | ||| Sbjct 386644 CCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGAC 386702 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| || || ||||| || |||| || ||||| |||||| Sbjct 386703 CAGCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTAC 386762 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||| ||||| | || || ||| | || ||||| Sbjct 386763 AACATCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCG 386800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172524904960