Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3 140 4e-28 seq1 116 5e-21 >seq3 Length=1361780 Score = 140 bits (154), Expect = 4e-28 Identities = 173/235 (74%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 102099 GCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 102158 |||||| | || | || || || | ||||| || || |||||| | |||||| || | Sbjct 14682 GCCATCGAGACCATCCCCTGCATCAAGAAGAAGGCCGACTGGGCTCTCAAGTGGATT--T 14739 Query 102159 ACAAAGTCGCGTTC--CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCT 102216 | | | | || | ||||| ||||| ||| | || ||||| || |||||||||| Sbjct 14740 CCGACGAGGAGTCCACCTTTGGCGAGCGGCTCATTGCCTTTGCCGCCGTCGAGGGTATCT 14799 Query 102217 TCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTC 102276 | ||||| || || ||| | | || | |||||||||||||||||||||||||| || | Sbjct 14800 TTTTCTCAGGCTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCC 14859 Query 102277 TCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 || ||||||||||||||| || ||||| |||||||| || ||| || ||||| Sbjct 14860 TCACCTTCTCCAACGAGCTCATTTCTCGAGACGAGGGTCTGCACACCGACTTTGC 14914 >seq1 Length=2434256 Score = 116 bits (128), Expect = 5e-21 Identities = 326/492 (66%), Gaps = 15/492 (3%) Strand=Plus/Minus Query 111704 GTTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAG 111763 ||||| ||||| | |||||||| ||||| || || || || | ||| | || Sbjct 1214094 GTTCACACACGCTTCTCCAACCCTGTTCAATGCAGGCACTCCCCGGGGCCAGCTATCGTC 1214035 Query 111764 TTGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGA 111823 || || || | || | | || || || ||| | ||||| |||| |||||||| Sbjct 1214034 CTGCTTTCTGGTCGCCATGAGCGAAGACTCCATCGACGGCATCTACGACACTCTCAAAAC 1213975 Query 111824 ATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGC 111883 || |||||||| |||||| || || || || || |||| ||||| | ||||||| Sbjct 1213974 GTGCGCCCAAATTTCAAAGACCGCAGGAGGCATAGGTCTGCATATCCACAACATCAGAGC 1213915 Query 111884 CAACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCG 111943 || | || | ||| | | || |||| || ||| |||| ||||| || Sbjct 1213914 TAAGGGCACCATCATCACAGGCTCTCAGGGAAAATCCTCAGGCATTGTTCCCATGCTCCG 1213855 Query 111944 CGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGG------GCGTCGCAAGGGATC 111997 || || || |||||| | || || |||||| || ||||| ||| | Sbjct 1213854 AGTGTTCAATAACACAGCCAGATACGTGGACCAAGGCGGCAACAAGCGTCCT---GGAGC 1213798 Query 111998 TATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGT-TGCGTC 112056 | |||||||| | ||||||||||| |||||||| |||| ||| |||| | |||| Sbjct 1213797 GTTTGCAGTCTACTTGGAGCCATGGCATGCGGATATTTTGGATTTC-TTGAATCTGCGCA 1213739 Query 112057 TCAACCAAGGTGATGAGGAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCA 112115 ||||| || | ||||| | | || || |||||||| | ||| | ||| |||| Sbjct 1213738 AAAACCACGGAGCCGAGGAAAA-CAGAGCACGTGATCTCTTTTACGCATTATGGGTTCCC 1213680 Query 112116 GATCTCTTCATGAAGAGAGTTG-AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAA 112174 ||||| |||||||||||||| | | ||| | | || ||||| || || ||||| | || Sbjct 1213679 GATCTGTTCATGAAGAGAGTCGAAAGAG-GCGAGAAATGGTCGCTTTTCTGTCCCAAAAA 1213621 Query 112175 GGCACCCGGTCT 112186 ||| ||||| || Sbjct 1213620 GGCTCCCGGACT 1213609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742058591680