Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq3 141 1e-28 seq1 122 1e-22 >seq3 Length=1361780 Score = 141 bits (156), Expect = 1e-28 Identities = 355/530 (67%), Gaps = 31/530 (6%) Strand=Plus/Minus Query 119222 CTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATAAAGTCAAAAGGATT 119281 ||| |||||||| || |||||||| | || |||||||| ||||| ||||| || || || Sbjct 15188 CTTCTCGAAGAAGTTGGTCTTACCGGCCAGAGAGATGTTCTCCATGAAGTCGAAGGGGTT 15129 Query 119282 TTTGGAGTTCCAGA--TTGGTGGTT----GACCAACTTGTTTCAGAAGACGATCGGAGAC 119335 ||||||| ||| |||||| | || |||| ||| || || |||| ||| Sbjct 15128 GGTGGAGTTGTAGACCTTGGTGTTGCCGAGAGCAAC------CAGCAGTCGGTCGGCGAC 15075 Query 119336 ATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACACGGGAGAGC 119395 | |||| || || | | |||| | | ||||| || | ||| ||| || ||||| Sbjct 15074 AAACTCAATGTACTGGCACATGAGCTTGGCGTTCATGCCGAGCAGACCACAGGGCAGAGC 15015 Query 119396 ATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGT----GAATAG 119451 ||| | ||| | || |||||| | ||||| || || ||| || || | Sbjct 15014 GTCGGTCAGGAACTCCTGCTCGATGCCAACAGCCTCG---ACAATGACGTCCTCGACAAT 14958 Query 119452 TTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACAACTCTAC---GGCAAATTCTTGAT 119508 |||| | || ||| ||| ||| ||| | | | || | |||||| || | Sbjct 14957 CTTCT-TGGAGGGTCGGTT-CTC--GAGGTGAGAGAAGAGCAGACAGGCAAAGTCGGTGT 14902 Query 119509 GAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTC 119568 | || || || || ||||| |||||||| || |||| || || |||||||| |||| Sbjct 14901 GCAGACCCTCGTCTCGAGAAATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGACCTC 14842 Query 119569 TTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGG 119628 ||||| ||||| ||||||| ||| || || || ||||| ||||| || || Sbjct 14841 GCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCTGAGAAAAAGATACCCTCGACGGCGG 14782 Query 119629 CGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTT-GTCGAA---CCACTTGAGAGCC 119684 | || || | || ||||| || |||||| || | | |||| | ||||||||||||| Sbjct 14781 CAAAGGCAATGAGCCGCTC-GCCAAAGGTGGACTCCTCGTCGGAAATCCACTTGAGAGCC 14723 Query 119685 CAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAG 119734 |||| |||||| || |||||||||| || | |||||| | ||| || Sbjct 14722 CAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCGTTGAACAG 14673 Score = 102 bits (112), Expect = 1e-16 Identities = 314/477 (66%), Gaps = 23/477 (5%) Strand=Plus/Plus Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565 ||||| || || || || || || || |||||| | |||| |||||| || ||||| Sbjct 134814 TCGAATCGGCCGGGTCGCAGAAGGGCGGGATCAAGCACATCGGGACGGTTGGTTCCGGCA 134873 Query 11566 ATGACTACAATGCCAGTCTCATTG-TCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGAT 11624 | || || | | | || | ||||| |||||||| || || |||||||| | Sbjct 134874 AGAACAACCACGTGA-TCGGACGACTCGAAGCCGTCCATCTCGACTAGCAGCTGGTTCAG 134932 Query 11625 CGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAA----CGCTTC-----TT 11675 ||| ||| ||||| |||||| | | || ||| | | ||| || || Sbjct 134933 CGTTGCTTCTCGCTCGTCGTTG-----CCT-CCGCCTCGAGTAGCGTCGCCTCGAGCCTT 134986 Query 11676 ACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTC 11735 || | ||||||||||| || || || || ||| | || |||| || ||||| | Sbjct 134987 TCCAATGGCGTCAATCTCGTCAATAAACACAATAGAGGGGGCCATGGCTCGGGCCTGCTT 135046 Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795 ||| || || || || ||| ||||||||| || || |||||||| | ||| | | | Sbjct 135047 GAACAGGTCTCGAACTCGCGACGCTCCAACTCCAACAAACATCTCCATGAACTCGGATCC 135106 Query 11796 AGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCT 11854 || |||| || | |||||| || | || ||||| | || || | ||||||| Sbjct 135107 AG-ACACGGACAGGAAGGGCACTCCGGCTTCGCCAGCCGTAGCCTTGGCCACCAGAGTCT 135165 Query 11855 TACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--ACTTCC 11912 | || || || || | ||||| || | ||| || |||||||||||||| || |||| Sbjct 135166 TTCCGGTTCCGGGAGGACCAGAAAGCACGGCTCCTCGGGGGATCTTGGCGCCGAGCTTC- 135224 Query 11913 AAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 ||| || || | ||||||||||| |||| |||| | ||| ||||||| Sbjct 135225 -TCGTACTTCTTGGGGTCCTTGAGGAAGTTGACAAACTCCATGATTTCGACCTTGGC 135280 >seq1 Length=2434256 Score = 122 bits (134), Expect = 1e-22 Identities = 499/778 (64%), Gaps = 34/778 (4%) Strand=Plus/Plus Query 110380 TTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTT 110439 |||||||| || ||||| | |||||| || ||||| |||||| | ||| |||||| Sbjct 1213429 TTCTTCTGGTTGGATTTCGCGTTGCAGCTGTCTTTATACAGCATGAACGGGCCTCCAGTT 1213488 Query 110440 TCCGTCTGTGACTTG--AGAATGGCCTTCCATACATCGGCGGCGGGGAC-----AGTTGC 110492 || |||| |||| ||||| ||||| | | || |||| || ||||| Sbjct 1213489 TCAATCTGG--CTTGTCAGAATCGCCTTGAACAGCTCCTGGGCGTCGATTTGCGAGTTGT 1213546 Query 110493 ---GTTAGCGAGAC-CTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGT 110548 | | |||||| | | ||| ||||||||| || | || || |||| Sbjct 1213547 ACAGCTTTCGAGACTCGTACTCTTCGTACTTGCGGT---------CGAAATCAGGTCCCC 1213597 Query 110549 ACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCT 110608 | | || | || || ||||| | ||||||||| || ||||| |||| |||| | Sbjct 1213598 AGATGTCTGCCAGTCCGGGAGCCTTTTTGGGACAGAAAAGCGACCA-TTTCTCGCCTCTT 1213656 Query 110609 -CAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGA 110667 | || |||||||||||||| || |||| ||| | || | || || ||||| | Sbjct 1213657 TCGACTCTCTTCATGAACAGATCGGGAACCCATAATGCGTAAAAGAGATCACGTGCTCTG 1213716 Query 110668 GCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCAT 110727 || || | || ||||| ||| || | ||| || |||| ||||||| |||||| Sbjct 1213717 TTTTCCTCGGCTCCGTGGTTTTTGCGCAGATTCAAGAAATCCAAAATATCCGCATGCCAT 1213776 Query 110728 GGTTCGAGATAGACAGCGATGGATCCCTTACGACGAC-----CCGCCT-GGTTAACATAG 110781 || || | ||||| || | | ||| | |||| |||||| ||| || || Sbjct 1213777 GGCTCCAAGTAGACTGCAAACGCTCC---AGGACGCTTGTTGCCGCCTTGGTCCACGTAT 1213833 Query 110782 CGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTA 110841 | |||||| |||||| || | |||||| |||| ||| || ||||| || | | Sbjct 1213834 CTGGCTGTGTTATTGAACACTCGGAGCATGGGAACAATGCCTGAGGATTTTCCCTGAGAG 1213893 Query 110842 CCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCC 110901 || | || ||| || || | |||| ||||||||||| ||| || || || || Sbjct 1213894 CCTGTGATGATGGTGCCCTTAGCTCTGATGTTGTGGATATGCAGACCTATGCCTCCTGCG 1213953 Query 110902 CACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCC 110961 ||| |||||| || ||| | |||| || | || || || || || || ||| | Sbjct 1213954 GTCTTTGAAATTTGGGCGCACGTTTTGAGAGTGTCGTAGATGCCGTCGATGGAGTCTTCG 1214013 Query 110962 TTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGT 111021 | |||| | |||||||| || || | ||| || || || || |||||||| || Sbjct 1214014 CTCATGGCGACCAGAAAGCAGGACGATAGCTGGCCCCGGGGAGTGCCTGCATTGAACAGG 1214073 Query 111022 GTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAG 111081 || || | || || ||||| | |||| | ||| || ||||| | Sbjct 1214074 GTTGGAGAAGCGTGTGTGAACTTTTTGAGCGACAGAGCCTGGTAAGTATCGAGGACCTTA 1214133 Query 111082 GGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGG-CGTT 111138 || | || || ||||| ||||| | || |||| ||||| ||||| ||| || |||| Sbjct 1214134 GGGAGGTCGTTGCCGTGGATACCCAGAGCCACTCTCATGAGCATATGTTGGGGTCGTT 1214191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975676063200