Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq4 165 2e-35 seq14 149 1e-30 seq3 147 5e-30 >seq4 Length=1325655 Score = 165 bits (182), Expect = 2e-35 Identities = 171/224 (76%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||||| || ||| || || ||||||||||| || || || ||||| || | ||| || Sbjct 386807 TCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGT 386748 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || || || |||||||||||||| |||||||||||||| || ||||| || ||||| || Sbjct 386747 TCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCC 386688 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || ||||| || || || ||||||||| || |||||||| ||| ||||| ||||| Sbjct 386687 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAG 386628 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||| | ||||| || || | || || || || | ||||||| Sbjct 386627 GGTGATAGTCTTACCGGTAAGGGTCTTGACAAAGATCTGCATTT 386584 >seq14 Length=605277 Score = 149 bits (164), Expect = 1e-30 Identities = 144/185 (78%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||||| | |||||||| |||||||| || || || || ||||| |||| ||| || Sbjct 298768 TCGGAGTCGGAGCACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGT 298827 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || || || || ||||||||||| |||||||||||||| || ||||| || || || || Sbjct 298828 TCGACCGTCCTCCAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATACC 298887 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || ||||| ||||| || ||||||||| || |||||||| ||| || || ||||| Sbjct 298888 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCGACCTCAAG 298947 Query 195099 GGTAA 195103 ||||| Sbjct 298948 GGTAA 298952 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||||| | ||| || || ||||||||||| || || || ||||| || | || || Sbjct 299714 TCGGAGTCGGAGAACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGT 299773 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || || || || |||||||| || || || || ||||| || ||||| || ||||| || Sbjct 299774 TCGGCCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCC 299833 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || ||||| ||||| || |||||| || ||||||||||| || || || || || Sbjct 299834 CTCCTTGTCCTGAATCTTAGACTTGACATTGTCAATGGTGTCGGAGGACTCAACCTCGAG 299893 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | |||||||| |||| || || || || | ||||| Sbjct 299894 AGTGATGGTCTTTCCAGTCAGGGTCTTGACAAAGATCTGCAT 299935 >seq3 Length=1361780 Score = 147 bits (162), Expect = 5e-30 Identities = 172/231 (74%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||||| || ||| || || ||||||||||| || || || ||||| || | |||||| Sbjct 557866 TCGGAGTCGCAGAACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGT 557807 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || || || ||||||||||| || ||||| || ||||| || ||||| || || || || Sbjct 557806 TCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGGATTCC 557747 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || ||||| || || || ||||||||| ||||||||||| || ||||| || || Sbjct 557746 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACCTCGAG 557687 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTTA 195149 ||| | ||||| || || | || || || || | ||||| ||| |||| Sbjct 557686 GGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA-CTATTGTTA 557637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109480974529748