Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01]
44 sequences; 20,877,144 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq14 116 2e-21
seq3 100 2e-16
seq4 98.7 6e-16
>seq14
Length=605277
Score = 116 bits (128), Expect = 2e-21
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| || ||| |||| | || || ||||| ||||| |||||
Sbjct 299745 TCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCGTCCTCAAGCTGCTTTCCAGCAAAA 299804
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| ||||| |||||||| | || | ||||||||||| |||||| |||||
Sbjct 299805 ATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGAATCTTAGACTTGACATTG 299864
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || || |||||| |||| || ||||| ||||| || || ||||| |||
Sbjct 299865 TCAATGGTGTCGGAGGACTCAACCTCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGACA 299924
Query 34971 AAGATCTGCATA 34982
||||||||||||
Sbjct 299925 AAGATCTGCATA 299936
Score = 87.8 bits (96), Expect = 1e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
||| ||||| ||||| ||||| |||||| |||| | || |||||||| || ||||| ||
Sbjct 298798 TTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGACCGTCCTCCAGCTGCTTACCGGCGAA 298857
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897
|| ||||| |||||||| | || | ||||||||||| ||||||
Sbjct 298858 GATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGAATCTT 298905
>seq3
Length=1361780
Score = 100 bits (110), Expect = 2e-16
Identities = 140/195 (72%), Gaps = 1/195 (1%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| ||||| |||| | || || ||||| || ||||| ||
Sbjct 557835 TCCTTCTGGATGTTGTAGTCAGAAAGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAA 557776
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| ||||| |||||||| | || | ||||||||||| ||||| ||||||
Sbjct 557775 ATCAGTCGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG 557716
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | ||| || ||| || |||| ||| || || || || || || ||||| |||
Sbjct 557715 TCAATGGTGTCAGAGGACTCCACCTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACA 557656
Query 34971 AAGATCTGCA-TATT 34984
||||| |||| ||||
Sbjct 557655 AAGATTTGCACTATT 557641
>seq4
Length=1325655
Score = 98.7 bits (108), Expect = 6e-16
Identities = 140/196 (71%), Gaps = 1/196 (1%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| |||||| |||| | || || ||||| || ||||| ||
Sbjct 386776 TCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAG 386717
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| ||||| |||||||| | || | ||||||||||| ||||| ||||||
Sbjct 386716 ATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG 386657
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || | ||| || || | ||| || || || || || || ||||| |||
Sbjct 386656 TCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACA 386597
Query 34971 AAGATCTGCATATTCG 34986
||||||||||| ||||
Sbjct 386596 AAGATCTGCAT-TTCG 386582
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324633425915232
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |