Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01]
44 sequences; 20,877,144 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq14 111 1e-19
seq4 96.9 3e-15
seq3 95.1 9e-15
>seq14
Length=605277
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
|||| ||| || ||| ||| || || || ||||| ||||| || |||| |||| ||
Sbjct 299727 ACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCGTCCTCA 299786
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
| |||||| || ||||| ||||||||||| || |||| ||||| ||||||||||| |
Sbjct 299787 AGCTGCTTTCCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGA 299846
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
||||| || ||| | | | || || | ||| ||||| | || || || |||
Sbjct 299847 ATCTTAGACTTGACATTGTCAATGGTGTCGGAGGACTCAACCTCGAGAGTGATGGTCTTT 299906
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| |||| || || ||||| ||||||||
Sbjct 299907 CCAGTCAGGGTCTTGACAAAGATCTGCAT 299935
Score = 93.3 bits (102), Expect = 3e-14
Identities = 90/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
|||| ||| || || ||| || || || ||||||||||| ||| ||||| | || ||
Sbjct 299955 ACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGAGAGAGTTCGACCATCCTCA 300014
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673
| |||||| || || || ||||||||||| || |||| ||||| |||||||||||
Sbjct 300015 AGCTGCTTTCCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATACCCTCCTTGTC 300070
Score = 86.0 bits (94), Expect = 5e-12
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635
|| || || || ||||| || || || ||||| |||| |||| |||||||||||| ||
Sbjct 298799 TCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGACCGTCCTCCAGCTGCTTACCGGCGAAG 298858
Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682
|| |||||||| || |||| ||| | ||||||||||| ||||||
Sbjct 298859 ATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGAATCTT 298905
>seq4
Length=1325655
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||| || | ||| || ||| ||| || || || ||||| ||||| || ||||
Sbjct 386803 AGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGG 386744
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| || | |||||||||||| || || |||||||| || |||| ||||| ||||||
Sbjct 386743 CCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCC 386684
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || || | | | || || | ||||||||| | ||
Sbjct 386683 TTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTG 386624
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || || | || || ||||| ||||||||
Sbjct 386623 ATAGTCTTACCGGTAAGGGTCTTGACAAAGATCTGCAT 386586
>seq3
Length=1361780
Score = 95.1 bits (104), Expect = 9e-15
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||| |||| ||| || ||| ||| || || || ||||| ||||| ||| ||||
Sbjct 557862 AGTCGCAGAACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCGG 557803
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| || | |||||| ||||| || ||||||||||| || |||| ||| | ||||||
Sbjct 557802 CCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGGATTCCCTCC 557743
Query 48669 TTGTC 48673
|||||
Sbjct 557742 TTGTC 557738
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380937395722212
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |