Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq24 320 3e-82 seq3 291 2e-73 seq1 104 4e-17 >seq24 Length=170883 Score = 320 bits (354), Expect = 3e-82 Identities = 965/1462 (66%), Gaps = 41/1462 (3%) Strand=Plus/Minus Query 221427 CGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAGG 221486 |||||||||||||||| |||||| ||||||| |||||||||||| ||| |||| Sbjct 96537 CGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCGGCAGACTCAAAGG 96478 Query 221487 GCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGT 221546 | | ||||| | ||| ||||||||| ||||| || || | | | || || | | Sbjct 96477 GAAGTCGCAGAGCCATGAAGGTGTCGGCCAGACCCTGAACACCCAGAGCAATAGGTCGAT 96418 Query 221547 GTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGT 221606 ||| | ||||||| || || || ||||| || |||| |||||| | || Sbjct 96417 GTCGCATGTTGGACTTCTTTGCCTCGGGAACGGGGTAGTAGTTTCGGTCGATAATGGCGT 96358 Query 221607 TGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACT 221666 ||||||| | |||||||| | | ||| |||||||| | | | | | | | Sbjct 96357 TGAGGTTTCGCACAATGACTTTGGCGATATCGTGCAGCTTCTTGAAGTCGTAGAAGGAGT 96298 Query 221667 CGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACA 221726 | | |||| | ||| | ||||| | | ||||||| | ||||||||| || | Sbjct 96297 TGGTGTCGTC-TCGAGTG-----ACAAAGGTGGGCAGGGCAATGGAGGCCAGGTTGCAAA 96244 Query 221727 CGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGA 221786 | |||||||| || | |||| | ||||| || |||||| |||||| Sbjct 96243 CAGCCACCTCATCGGGAGAAGAGTACTCGACAATCTCGCAGCACAGGTTGGAAGACTTGA 96184 Query 221787 TGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGG 221846 |||| || |||| || || || ||||| || ||| ||| |||||||||||||| |||| Sbjct 96183 TGGTTCCGAGGTTCTTCTGGTTGGACTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAGG 96124 Query 221847 GACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGG-CGCTCACC 221905 | || | ||| ||| | ||||| | || ||| || | ||||| || | Sbjct 96123 GGTTACCGGACTCGGTCTGGCAGTCGAGAATGTGGTACCACAGCT-TCTGGGCGGGGATG 96065 Query 221906 GTCCTCTTGACTGCA-CCCTCGGTCTTTTCATAC--CCGGTATAGA-GCATGTCAAACTT 221961 || | | ||| | ||||| ||| || ||| | ||| || || || |||| Sbjct 96064 GTTCG-TCGACCTCGGCCCTC---CTTCTCGTACTGCTCGTACAGCTGCTTG---AACTC 96012 Query 221962 TTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTT 222021 || ||||| | |||||||| || |||||| | ||| ||||| ||| |||| | Sbjct 96011 GTCGCCGTAGACGTCGTCCAGACCGGGACACTCGTTGGGGCACATGAGAGTCCACTCGGC 95952 Query 222022 GTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCT 222081 ||| | | ||| | || |||||| || || ||||||||||| ||| | || || |||| Sbjct 95951 GTTCTGCTCGACTCGCTCCATGAACAGATCGGGGATCCACAGGGCCAGGAACAGGTCTCG 95892 Query 222082 GGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGC 222141 || || ||||||| |||| ||| || | ||| || | ||||| || ||||| | Sbjct 95891 GGCTCGAATCTCCTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGATGTCGTC 95832 Query 222142 GTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 |||||| ||||| || || | ||| | || ||||||||||||||||| ||||| ||||| Sbjct 95831 GTGCCAGGGCTCAAGGTACATGGCAAAGGCTCCGGGTCGCTTGTTGCCTCCCTGGTCCAC 95772 Query 222202 -CATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCG 222259 ||| ||| | |||| ||| || || | || || | |||||||| ||| Sbjct 95771 GTATC--GGGCAGTGTTGTTGTAGACACGCAGCATGGGCACGATACCGTTGGAGGTTCCG 95714 Query 222260 TTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCCGATACCA 222319 |||||||| |||||| | ||| ||| | | ||| | || | |||||||| Sbjct 95713 TTGGTGCCGGCAATGTAGGAGCCGGTGGCTCGGATGTTGTGGATGGAGAGACCGATACCG 95654 Query 222320 CCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAG 222379 || || || || |||| || ||| ||||||| || || |||||| || || ||| Sbjct 95653 CCAGCAGACTTGGAAATCAGAGCACAGGTCTTGAGGGTATCGTAGATGCCGTCGATGGAG 95594 Query 222380 TCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTA 222439 || ||||| | ||| | || ||||| ||||||||||| | | || || | ||||| Sbjct 95593 TCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGGGGCTGGGGGGTTCCAGCGTTG 95534 Query 222440 AACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACG 222499 | || ||||| ||||| |||||||| | |||||| | ||| ||||| | | Sbjct 95533 TAGAGGGTGGGGGAAGCGTGGGTAAAGTACTTCTGAGACATGTAGTTGTAGGTCTCGATG 95474 Query 222500 ACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGC 222559 ||| ||| |||| ||| ||||| || | || || |||| ||| | |||||| Sbjct 95473 GCTCGGGCAATGTCGTCACCGTGGATTCCGACGGACACTCGCATGATCATCTGCTGGGGT 95414 Query 222560 CTCT---CCACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAAC 222616 | || | |||| || ||| || | | |||||| | | ||||| || || || Sbjct 95413 CGCTCGGCAACAGCTCCGTTG--ACTCG-CAACAGGTATGCTCGCTCCAGGGTTTTAAAG 95357 Query 222617 CCAAAGTAGTTG-AGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCAGCTC--CGAC 222673 |||||||||||| |||| ||||||| | ||| | | |||| ||| ||||| || | Sbjct 95356 CCAAAGTAGTTGTAGGT-GAAGTCTCGGTCGTAGAGAATGGCGCCGTTGAGCTCGTCGGC 95298 Query 222674 -TTGTGCTTTACGCTCAACTCGAAAAAGCGCTCAGACACGAGGGGAGCGTTCTCTTTGGT 222732 || || ||| | ||| | | || ||||| | ||| | | || | | || Sbjct 95297 GTTCGACTGGACGGT---GTCGTACAGCTCCTTGGACACCATGGGTGAATGCT-TCTTGT 95242 Query 222733 GTCG-GGGTTAACGTTGTGGTACAGCTGCCACATGGCATCAGAGAAC-GTGTCGGGAGTC 222790 ||| || || |||| |||||| || | | | | | || ||| | || | ||| Sbjct 95241 TTCGAGGATTCACGTAGTGGTAGAGGTCATAGACCACCTGCGAAAACTGCTTCTTG-GTC 95183 Query 222791 TGCTTGTGCAGATTCGACACGGCGATCCGAGACGCCAAGATACCATAGTCAGGGTGCACG 222850 || |||||||| || ||||||||||| || | |||| || | ||||| || |||| Sbjct 95182 TGTTTGTGCAGGTTGGACACGGCGATTCGGGCAGCCAGAATGGCGTAGTCGGGATGCAGA 95123 Query 222851 GTGGTCATGCTGGCTAGGGTCT 222872 ||||||||| ||| ||||| Sbjct 95122 GTGGTCATGTAGGCGGCGGTCT 95101 >seq3 Length=1361780 Score = 291 bits (322), Expect = 2e-73 Identities = 585/863 (68%), Gaps = 30/863 (3%) Strand=Plus/Plus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || || ||| ||||||||||||||||| | || |||||| || || ||||| ||| Sbjct 14358 GAGATCTGGCAGATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATCGAT 14417 Query 25534 CTGGCCAAGGACATGGACGGCTGGTA----CG-CTCTATCCAAAGACGAGCAGCATTTTC 25588 || | ||||||||||| || |||| | || ||| | ||| ||||||| | | ||| Sbjct 14418 CTCGGCAAGGACATGGGCGACTGGGAGAACCGACTCAA--CAACGACGAGC-GATTCTTC 14474 Query 25589 -TCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGC 25647 || |||| |||| |||||||| ||||| || || || || |||||||| ||| Sbjct 14475 ATCTCTCACGTTCTGGCCTTCTTTGCTGCCTCCGACGGAATCGTCAACGAGAACCTGGTG 14534 Query 25648 GAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATG 25707 ||| ||||| || | || || ||| ||||||||||| |||||||| |||||||| Sbjct 14535 GAGCGATTCTCCGGCGAGGTCCAGGCTCCCGAGGCCAAGTGCTTCTACGGCTTCCAGATC 14594 Query 25708 GCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACA 25764 || || || | ||||| || || | ||| || || || ||||| | Sbjct 14595 ATGATGGAGAACATCCACTCGGAAACCTACTC---GCTGCTCATCGACACATACATCAAG 14651 Query 25765 GACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGG 25824 ||| | ||| || | ||||| ||||||||| ||| ||| ||||||||| | Sbjct 14652 GACCCCAAGGAGCGAAACTACCTGTTCAACGCCATCGAGACCATCCCCTGCATCAAGAAG 14711 Query 25825 AAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTG 25884 ||||| ||||| | |||||||| | | || | || |||||||||||||| Sbjct 14712 AAGGCCGACTGGGCTCTCAAGTGGATTTCCGACGAGGAGTCCACCTTTGGCGAGCGGCTC 14771 Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 | |||||||| || || ||||| ||||||||| || || || || ||||||||||| Sbjct 14772 ATTGCCTTTGCCGCCGTCGAGGGTATCTTTTTCTCAGGCTCTTTCGCCTCCATCTTCTGG 14831 Query 25945 CTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGAC 26004 |||||| || || ||||||||| || ||| |||||||||||||| | ||| Sbjct 14832 CTCAAGAAGCGAGGTCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATTTCTCGAGAC 14891 Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAA---A 26061 |||||||| |||| || |||||||| ||||||| | | ||| ||| | || | Sbjct 14892 GAGGGTCTGCACACCGACTTTGCCTGTCTGCTCTTCTC---TCAC---CTCGAGAACCGA 14945 Query 26062 CCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTT 26120 || || |||| ||| ||| | |||| |||||||| | |||||| ||||||| Sbjct 14946 CCCTC-CAAGAAGATTGTCGAGGACGTCATTGTCGAGGCTGTTGGCATCGAGCAGGAGTT 15004 Query 26121 TCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATA 26180 | | ||||||||| || |||||| |||| || Sbjct 15005 CCTGACCGACGCTCTGCCCTGTGGTCTGCTCGGCATGAACGCCAAGCTCATGTGCCAGTA 15064 Query 26181 CATTGAGTATGTGGCCGACCATCTGCTG--TGCCAGCTGGGACTCGCCAGACTCTACAGT 26238 |||||||| ||| ||||||| |||||| ||| || || | ||| |||||| Sbjct 15065 CATTGAGTTTGTCGCCGACCGACTGCTGGTTGC--TCTCGGCAACACCAAGGTCTACAAC 15122 Query 26239 ACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTT 26298 | | ||||| |||||||| ||||| ||||| || ||| || |||||||||||||| Sbjct 15123 TCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGCCGGTAAGACCAACTTCTTC 15182 Query 26299 GAAAAGAGGGTCGGCGACTATCA 26321 || ||| | ||| |||||| || Sbjct 15183 GAGAAGCGAGTCTCCGACTACCA 15205 >seq1 Length=2434256 Score = 104 bits (114), Expect = 4e-17 Identities = 132/178 (74%), Gaps = 3/178 (2%) Strand=Plus/Plus Query 222026 TCTTT-GACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTC-TGG 222083 ||||| ||| |||| |||||| || || || | ||| | || | ||||||||| | || Sbjct 1213653 TCTTTCGACTCTCTTCATGAACAGATCGGGAACCCATAATGCGTAAAAGAGATCACGTGC 1213712 Query 222084 TCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGT 222143 || | | ||||| | |||| |||||| | ||||| ||| || || ||||| || || | Sbjct 1213713 TCTGTTT-TCCTCGGCTCCGTGGTTTTTGCGCAGATTCAAGAAATCCAAAATATCCGCAT 1213771 Query 222144 GCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 |||| ||||||| ||||| || | || || || ||||||||||| || || ||||| Sbjct 1213772 GCCATGGCTCCAAGTAGACTGCAAACGCTCCAGGACGCTTGTTGCCGCCTTGGTCCAC 1213829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844289135360