Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01]
44 sequences; 20,877,144 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq3 197 2e-44
seq24 188 9e-42
seq6 183 4e-40
seq11 125 9e-23
seq18 107 2e-17
seq9 102 1e-15
>seq3
Length=1361780
Score = 197 bits (218), Expect = 2e-44
Identities = 221/293 (75%), Gaps = 17/293 (6%)
Strand=Plus/Minus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||| ||||| ||| || | |||||| |||| ||||||||||||||| || |||||
Sbjct 14897 ACCCTCGTCTCGAGAAATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGACCTCGCTT 14838
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
||||||||| ||||||| | |||| ||| ||||||||||| |||||||||||||||||
Sbjct 14837 CTTGAGCCAGAAGATGGAGGCGAAAGAGCCTGAGAAAAAGATACCCTCGACGGCGGCAAA 14778
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTG---ATCCACTTCATCGC 869355
| | |||||||||||| |||||||| || ||||| || | |||||||| | ||
Sbjct 14777 GGCAATGAGCCGCTCGCCAAAGGTG--GA----CTCCTCGTCGGAAATCCACTTGAGAGC 14724
Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 869415
|||||||||||| ||| | | | || | || ||||||||| || |||| | |
Sbjct 14723 CCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCGTTGAACAGGTAG----T 14668
Query 869416 TTCGGCC----GGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTCC 869464
|||| | |||||||||| || |||||||| || ||||| ||||| |||
Sbjct 14667 TTCGCTCCTTGGGGTCCTTGATGTATGTGTCGATGAGCAGCGAGTAGGTTTCC 14615
Score = 154 bits (170), Expect = 2e-31
Identities = 209/289 (72%), Gaps = 3/289 (1%)
Strand=Plus/Minus
Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690
|||||||||||||||| || ||||||||||||||| ||| | | |||| | | |
Sbjct 14616 CCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGAGCCT 14557
Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750
||||||| ||| || | ||||||||||| ||||| |||||| ||| || |
Sbjct 14556 GGACCTCGCCGGAGAATCGCTCCACCAGGTTCTCGTTGACGATTCCGTCGGAGGCAGCAA 14497
Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG-CG--ACACCCAGT 869807
| || ||||| ||||| ||| ||| |||||||||| | |||| || | ||||||
Sbjct 14496 AGAAGGCCAGAACGTGAGAGATGAAGAATCGCTCGTCGTTGTTGAGTCGGTTCTCCCAGT 14437
Query 869808 GGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867
| | |||| || ||| || | |||||| || ||||||| || ||||| ||||| |
Sbjct 14436 CGCCCATGTCCTTGCCGAGATCGATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCT 14377
Query 869868 TGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCG 869916
||||||||| ||| | | ||||| |||| |||||||| ||||| ||
Sbjct 14376 TGTACATCTGCCAGATCTCATGGTACTGGATGGGGAAGAGCACAAACCG 14328
Score = 141 bits (156), Expect = 1e-27
Identities = 229/322 (71%), Gaps = 7/322 (2%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||| || ||| |||||| ||||||||||| || | || |||||
Sbjct 15211 GCCTTCTGGTAGTCGGAGACTCGCTTCTCGAAGAAGTTGGTCTTACCGGCCAGAGAGATG 15152
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | |||||| ||| | ||||| | |
Sbjct 15151 TTCTCCATGAAGTCGAAGGGGTTGGTGGAGTTGTAGACCTTGGTGTTGCCGAGAGCAACC 15092
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 15091 AGCAGTCGGTCGGCGACAAACTCAATGTACTGGCACATGAGCTTGGCGTTCATGCCGAGC 15032
Query 868871 AGCGCCAC-CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929
|| |||| ||||| | ||| ||| ||||| | |||||| | || |||||||| ||
Sbjct 15031 AG-ACCACAGGGCAGAGCGTCGGTCAGGAACTCCTGCTCGATGCCAACAGCCTCGACAAT 14973
Query 868930 GATCTGCCTGGGCA--CGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987
|| | ||| | || | || ||||| ||| |||| | | ||||||| |||
Sbjct 14972 GA-CGTCCTCGACAATCTTC-TTGGAGGGTCGGTTCTCGAGGTGAGAGAAGAGCAGACAG 14915
Query 868988 GCAAAGTCGCAGTGCA-ACCCT 869008
||||||||| ||||| |||||
Sbjct 14914 GCAAAGTCGGTGTGCAGACCCT 14893
>seq24
Length=170883
Score = 188 bits (208), Expect = 9e-42
Identities = 334/489 (68%), Gaps = 15/489 (3%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||| ||||| || || |||| ||| |||| || ||||||||||||| ||||||||
Sbjct 95780 CTGGTCCACGTATCGGGCAGTGTTGTTGTAGACACGCAGCATGGGCACGATACCGTTGGA 95721
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
||||||||||| || | ||||| ||||| ||| || | ||||| || | ||
Sbjct 95720 GGTTCCGTTGGTGCCGGCAATGTAGGAGCCGGTGGCTCGGATGTTGTGGATGGAGAGACC 95661
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||| ||||| || |||||||| || || || || ||||| || ||||||||||| ||
Sbjct 95660 GATACCGCCAGCAGACTTGGAAATCAGAGCACAGGTCTTGAGGGTATCGTAGATGCCGTC 95601
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
||| |||||| ||||||||| || || || |||||||| | || || || | || ||
Sbjct 95600 GATGGAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGGGGCTGGGGGGTTCC 95541
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
|||||| |||| ||||| | || ||| || ||| | | |||||| || ||||||
Sbjct 95540 AGCGTTGTAGAGGGTGGGGGAAGCGTGGGTAAAGTACTTCTGAGACATGTAGTTGTAGGT 95481
Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424
||| | || | | | |||| || || | | |||| || ||
Sbjct 95480 CTCGATGGCTCG------------GGCAATGTCGTCA---CCGTGGATTCCGACGGACAC 95436
Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484
||||||| ||| | |||||| |||||| | || | ||| || |||||| |
Sbjct 95435 TCGCATGATCATCTGCTGGGGTCGCTCGGCAACAGCTCCGTTGACTCGCAACAGGTATGC 95376
Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544
|| || ||| | | |||||||||| ||| || || ||||||| | | |||||
Sbjct 95375 TCGCTCCAGGGTTTTAAAGCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGTAGAGAATGGC 95316
Query 1630545 GGCGTCGAG 1630553
| ||| |||
Sbjct 95315 GCCGTTGAG 95307
Score = 102 bits (112), Expect = 1e-15
Identities = 326/507 (64%), Gaps = 12/507 (2%)
Strand=Plus/Minus
Query 1628100 GACAAACTTGGGCAGGGCCACGCTGGAAAGGTTGCAAGTCGCCACTTCCGTGGGCGACGA 1628159
|||||| |||||||||| | | || ||||||||| ||||| || ||| || ||
Sbjct 96281 GACAAAGGTGGGCAGGGCAATGGAGGCCAGGTTGCAAACAGCCACCTCATCGGGAGAAGA 96222
Query 1628160 AAACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTT 1628219
||| ||| |||||| ||||||||||| ||| | | || || ||||||| ||||||
Sbjct 96221 GTACTCGACAATCTCGCAGCACAGGTTGGAAGACTTGATGGTTCCGAGGTTCTTCTGGTT 96162
Query 1628220 GGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGC 1628279
|| | ||||| || ||||||| ||||||| |||| |||| |||| |||| ||
Sbjct 96161 GGACTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTACCGGACTCGGTCTG-GC 96103
Query 1628280 CG-CGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCG-CG--CGCGGCCCT 1628335
| ||| ||| |||| | || | ||||| || || || || | |||||||
Sbjct 96102 AGTCGAGAATGTGGTACCACAGCTTCTGGGCGGG---GATGGTTCGTCGACCTCGGCCCT 96046
Query 1628336 NNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGG 1628395
| || | |||||||| |||| ||| ||||
Sbjct 96045 CCTTCTCGTACTGCTCGTACAGCTGCTTGAACTCGTCGCCGTAGACGTCGTCCAGACCGG 95986
Query 1628396 GCGCCTCGGACGGACAAAAGAGCGACCAGTCGCC--ACCGGTCACCGCGCGGCGCATAAA 1628453
| |||| || || | ||| | ||| ||| | | | || | ||| ||| ||
Sbjct 95985 GACACTCGTTGGGGCACATGAGAGTCCACTCGGCGTTCTGCTCGACTCGC--TCCATGAA 95928
Query 1628454 GAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTG 1628513
|| || ||||||| || || ||||| || || || |||||||||| |||||
Sbjct 95927 CAGATCGGGGATCCACAGGGCCAGGAACAGGTCTCGGGCTCGAATCTCCTCCTTTCCGTG 95868
Query 1628514 GTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGC 1628573
||||||| || ||| | |||| |||||| ||||||| ||||| ||||| |||
Sbjct 95867 GTTCTTTCGCAGCTCGCAGAACTCGAAGATGTCGTCGTGCCAGGGCTCAAGGTACATGGC 95808
Query 1628574 AAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600
|||||| || |||||| ||| ||
Sbjct 95807 AAAGGCTCCGGGTCGCTTGTTGCCTCC 95781
>seq6
Length=1274382
Score = 183 bits (202), Expect = 4e-40
Identities = 296/423 (70%), Gaps = 2/423 (0%)
Strand=Plus/Plus
Query 18061 ATGAGCACATTCGGCAAGGTATTTAGGGTCACCACCTTTGGCGAGTCGCACGGGGCGGGC 18120
|||||||| ||||||| | | || | ||||||||||| |||||||||||| | | |
Sbjct 914481 ATGAGCACTTTCGGCACGCTTTTCAAGGTCACCACCTACGGCGAGTCGCACTGCAAGTCC 914540
Query 18121 GTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCCAG 18180
||||||||||| |||| || || || || | ||| || | ||| |||| ||||||
Sbjct 914541 GTCGGCTGCATTGTCGATGGAGTCCCCCCCGGAATGGATCTCGATGAGTCCGATATCCAG 914600
Query 18181 CCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAGCCC 18240
|| ||| || || || |||| || ||| || || |||| || || |||||||
Sbjct 914601 CCCCAGCTGACCCGACGAAGACCCGGACAGTCTGCTCTCACCACTCCTCGAAACGAGCGA 914660
Query 18241 GATCGC-GTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGG 18299
|| ||| || || ||| || || ||| ||||| || || || | ||| |||
Sbjct 914661 GA-CGCTGTTGCTATTCAGAGCGGAACCGAGTACGGCAAGACTCTGGGTACTCCCATCGC 914719
Query 18300 CCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGGTGCC 18359
| | || ||| |||||||| ||| ||||| || || ||| | | ||
Sbjct 914720 TATGCTGGTTCAGAACAAGGACCAGCGACCCCATGACTACTCTGAGATGGACGACTACCC 914779
Query 18360 GCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCGGG 18419
|| ||||| || ||||||||||||||| || ||||||||||||||||| || || ||
Sbjct 914780 TCGACCCTCCCATGCCGACTACACCTACCAGGAGAAGTACGGCATCAAGGCTTCTTCTGG 914839
Query 18420 CGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGA 18479
||||||||| || || ||||| |||||| | || || || |||||||| |||||||
Sbjct 914840 CGGAGGCCGATCTTCGGCCCGAGAGACCATTGGCCGAGTGGCTGCCGGCGCCATCGCCGA 914899
Query 18480 GAA 18482
||
Sbjct 914900 CAA 914902
Score = 104 bits (114), Expect = 3e-16
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 19065 GTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTGCTTTGACAAGATC 19124
|| || |||||| ||| ||| || | |||||||| ||||| || || |||||| ||
Sbjct 915135 GTCACCTGCGTGATTCGAAACTGCCCCGTTGGCCTCGGAGAGCCCTGTTTCGACAAGCTC 915194
Query 19125 GAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGGATTCGAGATTGGC 19184
|||||| | || ||||| |||||| |||| ||||| ||||||||||| |||||| ||||
Sbjct 915195 GAGGCCACCCTGGCCCATGCCATGATGTCCATCCCCGCCACCAAGGGTTTCGAGTTTGGT 915254
Query 19185 AGCGGGTTTGCGGGTGC 19201
|| ||||| || ||
Sbjct 915255 TCTGGCTTTGCCGGCGC 915271
>seq11
Length=998753
Score = 125 bits (138), Expect = 9e-23
Identities = 101/122 (83%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 1592171 TTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGC 1592230
|||||| | || || ||||||||||||| ||||||||||||||||| || | || |||
Sbjct 258020 TTTGAGATTATTCTGACCGCCAACTACCTGGACATCAAGCCTCTGCTGGACGTGGGCTGC 258079
Query 1592231 AAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAAC 1592290
||| | |||||||||||||||||||||||| | ||||||||||| || ||||| |||
Sbjct 258080 AAGACCGTGGCCAACATGATCAAGGGCAAGACCCCCGAGGAGATTCGACGAACCTTCAAC 258139
Query 1592291 AT 1592292
||
Sbjct 258140 AT 258141
>seq18
Length=471259
Score = 107 bits (118), Expect = 2e-17
Identities = 154/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| | | ||| || || ||||||||||||||||| || | ||
Sbjct 312108 GCTTGGCCAGCTCACCGGGGAGGATAAGTCGGACGGCGGTCTGGATCTCTCGAGAAGTGA 312167
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| |||| | || || || | |||||||||| | | || |||| |
Sbjct 312168 TGGTGGACTTCTTGGTGTAGGTGGCAAGCTTGGAGGCCTCGGTGGCAACTCGCTCGAAGA 312227
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
| ||||| || || |||||||||| ||||| | | ||||||| || ||||||||
Sbjct 312228 TATCGTTAACGAAGGAGTTCATGATGGACATGGCTCGGGTGGAGATACCAGTGTCGGGGT 312287
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559
| |||||| ||||||||||||||| | || |||||
Sbjct 312288 GGGTCTGCTTCAGCACCTTGTAGATGTAAGAAGAGTA 312324
>seq9
Length=1074676
Score = 102 bits (112), Expect = 1e-15
Identities = 201/292 (69%), Gaps = 4/292 (1%)
Strand=Plus/Plus
Query 507581 CTCCAGATCGGGTGGTCGGTCGAGCGCCACCTGCGCGCGGGCGACGCCGTGGTGATGAAC 507640
|| ||| ||| ||| ||| ||||| |||||| | ||| ||||| || | |||
Sbjct 875625 CTGCAGTACGGCTGGAAGGTGGAGCGACACCTGATGGACAACGATCCCGTGCTGTTCAAC 875684
Query 507641 CGGCAGCCGTCGCTGCACATGGGCTCCATGCTCATGCACAAGGTGGTGCCCATGCCCGGG 507700
|| ||||| |||||||| | |||||| | ||| ||| |||||| |
Sbjct 875685 CGACAGCCTTCGCTGCATAAAATGTCCATGATGGCGCATCGAGTGCGAGTCATGCC-GTA 875743
Query 507701 CGC-ACCATGCGATTCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGGCGA 507759
| | ||| | ||| | |||||| | || ||| ||||||||||||| || ||||| ||
Sbjct 875744 CTCGACCTTCCGACTGAACCTGTCGGTGACGTCGCCCTACAACGCCGATTTCGACGGAGA 875803
Query 507760 CGAGATGAACCTGCACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGGTGACGCACACCAT 507819
||| |||||| |||| ||||| ||||||||| | || |||||| || |||| | |
Sbjct 875804 CGAAATGAACTTGCATGTGCCTCAGTCCGAGGAAACTCGAGCCGAGCTGTCGCA-GCTGT 875862
Query 507820 G-AGCGTGTCGCTCAAGACCGTGTCGCCGCAGGCCAACAAGCCCATCATCGG 507870
| | ||| | || ||| ||||| || ||| | ||||||||| |||| ||
Sbjct 875863 GCATGGTGCCTCTGCAGATTGTGTCCCCTCAGTCTAACAAGCCCGTCATGGG 875914
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107135589153948
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |