Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3 197 2e-44 seq24 188 9e-42 seq6 183 4e-40 seq11 125 9e-23 seq18 107 2e-17 seq9 102 1e-15 >seq3 Length=1361780 Score = 197 bits (218), Expect = 2e-44 Identities = 221/293 (75%), Gaps = 17/293 (6%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| ||| || | |||||| |||| ||||||||||||||| || ||||| Sbjct 14897 ACCCTCGTCTCGAGAAATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGACCTCGCTT 14838 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| ||||||| | |||| ||| ||||||||||| ||||||||||||||||| Sbjct 14837 CTTGAGCCAGAAGATGGAGGCGAAAGAGCCTGAGAAAAAGATACCCTCGACGGCGGCAAA 14778 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTG---ATCCACTTCATCGC 869355 | | |||||||||||| |||||||| || ||||| || | |||||||| | || Sbjct 14777 GGCAATGAGCCGCTCGCCAAAGGTG--GA----CTCCTCGTCGGAAATCCACTTGAGAGC 14724 Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 869415 |||||||||||| ||| | | | || | || ||||||||| || |||| | | Sbjct 14723 CCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCGTTGAACAGGTAG----T 14668 Query 869416 TTCGGCC----GGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTCC 869464 |||| | |||||||||| || |||||||| || ||||| ||||| ||| Sbjct 14667 TTCGCTCCTTGGGGTCCTTGATGTATGTGTCGATGAGCAGCGAGTAGGTTTCC 14615 Score = 154 bits (170), Expect = 2e-31 Identities = 209/289 (72%), Gaps = 3/289 (1%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||||||||| || ||||||||||||||| ||| | | |||| | | | Sbjct 14616 CCGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGAGCCT 14557 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 ||||||| ||| || | ||||||||||| ||||| |||||| ||| || | Sbjct 14556 GGACCTCGCCGGAGAATCGCTCCACCAGGTTCTCGTTGACGATTCCGTCGGAGGCAGCAA 14497 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAG-CG--ACACCCAGT 869807 | || ||||| ||||| ||| ||| |||||||||| | |||| || | |||||| Sbjct 14496 AGAAGGCCAGAACGTGAGAGATGAAGAATCGCTCGTCGTTGTTGAGTCGGTTCTCCCAGT 14437 Query 869808 GGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 | | |||| || ||| || | |||||| || ||||||| || ||||| ||||| | Sbjct 14436 CGCCCATGTCCTTGCCGAGATCGATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCT 14377 Query 869868 TGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCG 869916 ||||||||| ||| | | ||||| |||| |||||||| ||||| || Sbjct 14376 TGTACATCTGCCAGATCTCATGGTACTGGATGGGGAAGAGCACAAACCG 14328 Score = 141 bits (156), Expect = 1e-27 Identities = 229/322 (71%), Gaps = 7/322 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||| || ||| |||||| ||||||||||| || | || ||||| Sbjct 15211 GCCTTCTGGTAGTCGGAGACTCGCTTCTCGAAGAAGTTGGTCTTACCGGCCAGAGAGATG 15152 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | |||||| ||| | ||||| | | Sbjct 15151 TTCTCCATGAAGTCGAAGGGGTTGGTGGAGTTGTAGACCTTGGTGTTGCCGAGAGCAACC 15092 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 15091 AGCAGTCGGTCGGCGACAAACTCAATGTACTGGCACATGAGCTTGGCGTTCATGCCGAGC 15032 Query 868871 AGCGCCAC-CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 || |||| ||||| | ||| ||| ||||| | |||||| | || |||||||| || Sbjct 15031 AG-ACCACAGGGCAGAGCGTCGGTCAGGAACTCCTGCTCGATGCCAACAGCCTCGACAAT 14973 Query 868930 GATCTGCCTGGGCA--CGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987 || | ||| | || | || ||||| ||| |||| | | ||||||| ||| Sbjct 14972 GA-CGTCCTCGACAATCTTC-TTGGAGGGTCGGTTCTCGAGGTGAGAGAAGAGCAGACAG 14915 Query 868988 GCAAAGTCGCAGTGCA-ACCCT 869008 ||||||||| ||||| ||||| Sbjct 14914 GCAAAGTCGGTGTGCAGACCCT 14893 >seq24 Length=170883 Score = 188 bits (208), Expect = 9e-42 Identities = 334/489 (68%), Gaps = 15/489 (3%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| ||||| || || |||| ||| |||| || ||||||||||||| |||||||| Sbjct 95780 CTGGTCCACGTATCGGGCAGTGTTGTTGTAGACACGCAGCATGGGCACGATACCGTTGGA 95721 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||||||||| || | ||||| ||||| ||| || | ||||| || | || Sbjct 95720 GGTTCCGTTGGTGCCGGCAATGTAGGAGCCGGTGGCTCGGATGTTGTGGATGGAGAGACC 95661 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| ||||| || |||||||| || || || || ||||| || ||||||||||| || Sbjct 95660 GATACCGCCAGCAGACTTGGAAATCAGAGCACAGGTCTTGAGGGTATCGTAGATGCCGTC 95601 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| |||||| ||||||||| || || || |||||||| | || || || | || || Sbjct 95600 GATGGAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGGGGCTGGGGGGTTCC 95541 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 |||||| |||| ||||| | || ||| || ||| | | |||||| || |||||| Sbjct 95540 AGCGTTGTAGAGGGTGGGGGAAGCGTGGGTAAAGTACTTCTGAGACATGTAGTTGTAGGT 95481 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 ||| | || | | | |||| || || | | |||| || || Sbjct 95480 CTCGATGGCTCG------------GGCAATGTCGTCA---CCGTGGATTCCGACGGACAC 95436 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||||| ||| | |||||| |||||| | || | ||| || |||||| | Sbjct 95435 TCGCATGATCATCTGCTGGGGTCGCTCGGCAACAGCTCCGTTGACTCGCAACAGGTATGC 95376 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544 || || ||| | | |||||||||| ||| || || ||||||| | | ||||| Sbjct 95375 TCGCTCCAGGGTTTTAAAGCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGTAGAGAATGGC 95316 Query 1630545 GGCGTCGAG 1630553 | ||| ||| Sbjct 95315 GCCGTTGAG 95307 Score = 102 bits (112), Expect = 1e-15 Identities = 326/507 (64%), Gaps = 12/507 (2%) Strand=Plus/Minus Query 1628100 GACAAACTTGGGCAGGGCCACGCTGGAAAGGTTGCAAGTCGCCACTTCCGTGGGCGACGA 1628159 |||||| |||||||||| | | || ||||||||| ||||| || ||| || || Sbjct 96281 GACAAAGGTGGGCAGGGCAATGGAGGCCAGGTTGCAAACAGCCACCTCATCGGGAGAAGA 96222 Query 1628160 AAACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTT 1628219 ||| ||| |||||| ||||||||||| ||| | | || || ||||||| |||||| Sbjct 96221 GTACTCGACAATCTCGCAGCACAGGTTGGAAGACTTGATGGTTCCGAGGTTCTTCTGGTT 96162 Query 1628220 GGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGC 1628279 || | ||||| || ||||||| ||||||| |||| |||| |||| |||| || Sbjct 96161 GGACTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTACCGGACTCGGTCTG-GC 96103 Query 1628280 CG-CGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCG-CG--CGCGGCCCT 1628335 | ||| ||| |||| | || | ||||| || || || || | ||||||| Sbjct 96102 AGTCGAGAATGTGGTACCACAGCTTCTGGGCGGG---GATGGTTCGTCGACCTCGGCCCT 96046 Query 1628336 NNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGG 1628395 | || | |||||||| |||| ||| |||| Sbjct 96045 CCTTCTCGTACTGCTCGTACAGCTGCTTGAACTCGTCGCCGTAGACGTCGTCCAGACCGG 95986 Query 1628396 GCGCCTCGGACGGACAAAAGAGCGACCAGTCGCC--ACCGGTCACCGCGCGGCGCATAAA 1628453 | |||| || || | ||| | ||| ||| | | | || | ||| ||| || Sbjct 95985 GACACTCGTTGGGGCACATGAGAGTCCACTCGGCGTTCTGCTCGACTCGC--TCCATGAA 95928 Query 1628454 GAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTG 1628513 || || ||||||| || || ||||| || || || |||||||||| ||||| Sbjct 95927 CAGATCGGGGATCCACAGGGCCAGGAACAGGTCTCGGGCTCGAATCTCCTCCTTTCCGTG 95868 Query 1628514 GTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGC 1628573 ||||||| || ||| | |||| |||||| ||||||| ||||| ||||| ||| Sbjct 95867 GTTCTTTCGCAGCTCGCAGAACTCGAAGATGTCGTCGTGCCAGGGCTCAAGGTACATGGC 95808 Query 1628574 AAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 |||||| || |||||| ||| || Sbjct 95807 AAAGGCTCCGGGTCGCTTGTTGCCTCC 95781 >seq6 Length=1274382 Score = 183 bits (202), Expect = 4e-40 Identities = 296/423 (70%), Gaps = 2/423 (0%) Strand=Plus/Plus Query 18061 ATGAGCACATTCGGCAAGGTATTTAGGGTCACCACCTTTGGCGAGTCGCACGGGGCGGGC 18120 |||||||| ||||||| | | || | ||||||||||| |||||||||||| | | | Sbjct 914481 ATGAGCACTTTCGGCACGCTTTTCAAGGTCACCACCTACGGCGAGTCGCACTGCAAGTCC 914540 Query 18121 GTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCCAG 18180 ||||||||||| |||| || || || || | ||| || | ||| |||| |||||| Sbjct 914541 GTCGGCTGCATTGTCGATGGAGTCCCCCCCGGAATGGATCTCGATGAGTCCGATATCCAG 914600 Query 18181 CCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAGCCC 18240 || ||| || || || |||| || ||| || || |||| || || ||||||| Sbjct 914601 CCCCAGCTGACCCGACGAAGACCCGGACAGTCTGCTCTCACCACTCCTCGAAACGAGCGA 914660 Query 18241 GATCGC-GTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGG 18299 || ||| || || ||| || || ||| ||||| || || || | ||| ||| Sbjct 914661 GA-CGCTGTTGCTATTCAGAGCGGAACCGAGTACGGCAAGACTCTGGGTACTCCCATCGC 914719 Query 18300 CCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGGTGCC 18359 | | || ||| |||||||| ||| ||||| || || ||| | | || Sbjct 914720 TATGCTGGTTCAGAACAAGGACCAGCGACCCCATGACTACTCTGAGATGGACGACTACCC 914779 Query 18360 GCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCGGG 18419 || ||||| || ||||||||||||||| || ||||||||||||||||| || || || Sbjct 914780 TCGACCCTCCCATGCCGACTACACCTACCAGGAGAAGTACGGCATCAAGGCTTCTTCTGG 914839 Query 18420 CGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGA 18479 ||||||||| || || ||||| |||||| | || || || |||||||| ||||||| Sbjct 914840 CGGAGGCCGATCTTCGGCCCGAGAGACCATTGGCCGAGTGGCTGCCGGCGCCATCGCCGA 914899 Query 18480 GAA 18482 || Sbjct 914900 CAA 914902 Score = 104 bits (114), Expect = 3e-16 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 19065 GTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTGCTTTGACAAGATC 19124 || || |||||| ||| ||| || | |||||||| ||||| || || |||||| || Sbjct 915135 GTCACCTGCGTGATTCGAAACTGCCCCGTTGGCCTCGGAGAGCCCTGTTTCGACAAGCTC 915194 Query 19125 GAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGGATTCGAGATTGGC 19184 |||||| | || ||||| |||||| |||| ||||| ||||||||||| |||||| |||| Sbjct 915195 GAGGCCACCCTGGCCCATGCCATGATGTCCATCCCCGCCACCAAGGGTTTCGAGTTTGGT 915254 Query 19185 AGCGGGTTTGCGGGTGC 19201 || ||||| || || Sbjct 915255 TCTGGCTTTGCCGGCGC 915271 >seq11 Length=998753 Score = 125 bits (138), Expect = 9e-23 Identities = 101/122 (83%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 1592171 TTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGC 1592230 |||||| | || || ||||||||||||| ||||||||||||||||| || | || ||| Sbjct 258020 TTTGAGATTATTCTGACCGCCAACTACCTGGACATCAAGCCTCTGCTGGACGTGGGCTGC 258079 Query 1592231 AAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAAC 1592290 ||| | |||||||||||||||||||||||| | ||||||||||| || ||||| ||| Sbjct 258080 AAGACCGTGGCCAACATGATCAAGGGCAAGACCCCCGAGGAGATTCGACGAACCTTCAAC 258139 Query 1592291 AT 1592292 || Sbjct 258140 AT 258141 >seq18 Length=471259 Score = 107 bits (118), Expect = 2e-17 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | ||| || || ||||||||||||||||| || | || Sbjct 312108 GCTTGGCCAGCTCACCGGGGAGGATAAGTCGGACGGCGGTCTGGATCTCTCGAGAAGTGA 312167 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||| | || || || | |||||||||| | | || |||| | Sbjct 312168 TGGTGGACTTCTTGGTGTAGGTGGCAAGCTTGGAGGCCTCGGTGGCAACTCGCTCGAAGA 312227 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | ||||| || || |||||||||| ||||| | | ||||||| || |||||||| Sbjct 312228 TATCGTTAACGAAGGAGTTCATGATGGACATGGCTCGGGTGGAGATACCAGTGTCGGGGT 312287 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | |||||| ||||||||||||||| | || ||||| Sbjct 312288 GGGTCTGCTTCAGCACCTTGTAGATGTAAGAAGAGTA 312324 >seq9 Length=1074676 Score = 102 bits (112), Expect = 1e-15 Identities = 201/292 (69%), Gaps = 4/292 (1%) Strand=Plus/Plus Query 507581 CTCCAGATCGGGTGGTCGGTCGAGCGCCACCTGCGCGCGGGCGACGCCGTGGTGATGAAC 507640 || ||| ||| ||| ||| ||||| |||||| | ||| ||||| || | ||| Sbjct 875625 CTGCAGTACGGCTGGAAGGTGGAGCGACACCTGATGGACAACGATCCCGTGCTGTTCAAC 875684 Query 507641 CGGCAGCCGTCGCTGCACATGGGCTCCATGCTCATGCACAAGGTGGTGCCCATGCCCGGG 507700 || ||||| |||||||| | |||||| | ||| ||| |||||| | Sbjct 875685 CGACAGCCTTCGCTGCATAAAATGTCCATGATGGCGCATCGAGTGCGAGTCATGCC-GTA 875743 Query 507701 CGC-ACCATGCGATTCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGGCGA 507759 | | ||| | ||| | |||||| | || ||| ||||||||||||| || ||||| || Sbjct 875744 CTCGACCTTCCGACTGAACCTGTCGGTGACGTCGCCCTACAACGCCGATTTCGACGGAGA 875803 Query 507760 CGAGATGAACCTGCACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGGTGACGCACACCAT 507819 ||| |||||| |||| ||||| ||||||||| | || |||||| || |||| | | Sbjct 875804 CGAAATGAACTTGCATGTGCCTCAGTCCGAGGAAACTCGAGCCGAGCTGTCGCA-GCTGT 875862 Query 507820 G-AGCGTGTCGCTCAAGACCGTGTCGCCGCAGGCCAACAAGCCCATCATCGG 507870 | | ||| | || ||| ||||| || ||| | ||||||||| |||| || Sbjct 875863 GCATGGTGCCTCTGCAGATTGTGTCCCCTCAGTCTAACAAGCCCGTCATGGG 875914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107135589153948