Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01]
44 sequences; 20,877,144 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq1 149 6e-31
seq4 105 6e-18
seq14 93.3 4e-14
>seq1
Length=2434256
Score = 149 bits (164), Expect = 6e-31
Identities = 363/546 (66%), Gaps = 8/546 (1%)
Strand=Plus/Plus
Query 138436 ATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGA 138495
||||| || ||| |||| || ||| | ||| || |||||| | || || |||||
Sbjct 1212679 ATGATTCGGTTTTTCATCTCCTCGGTCCACATGCCCAGCTTGATGAGATCTTTCATCAGC 1212738
Query 138496 TATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTG 138555
| ||| || ||| |||| || || ||| |||||||| | |||||||||| |||
Sbjct 1212739 CAATGGTTGATCACCAGAAACTCGCCTGCCTGGACTCGACGCAGGTAAATGTTGGACGTG 1212798
Query 138556 AAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTAC 138615
| |||||||| | ||||||| ||||||||||||| |||| ||| || |||||
Sbjct 1212799 TACGGCTCAAAACACTCGTTGTGGCCCAGAATCTGAGAAGTGGACGCTGTAGGCATAGGA 1212858
Query 138616 GCCACCAAAAGAGAATTCCGTAAACCGTG--AAGCTTGATTCGTTCCTTGAGCGACGACC 138673
||||| | | || || || | |||||| || | |||| ||| ||| | ||
Sbjct 1212859 GCCACTAGCAACGAGTTTCGCATACCGTGTTTGGCGAGCTTCG--ACTTTAGCAGAGCCC 1212916
Query 138674 AGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTG 138733
| ||||||| || || | |||||||||| ||| |||| ||| | ||| || |
Sbjct 1212917 AATCCCACAGGTCTGAGGGGGTCTTGTTCCACAAATCAAACTGCAACTTACCCTGGCTAG 1212976
Query 138734 CGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCT 138793
| |||||||| ||||| | ||||| || | || |||| |||| || ||||
Sbjct 1212977 CAGGACTGCCCTCGTAGGTCTCGTAGGGTCCTAGTTCAGCAGCCAGCTCGATGGAAGCCT 1213036
Query 138794 CGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGG--GCCTCGGC 138851
|| || ||| ||| || |||||| ||| | || | | |||| ||||||
Sbjct 1213037 CGCAGGCGGCATGGTAGATTGTTTCGAAAATGAGAACGTTCA--ACTCGGCAGCCTCGAG 1213094
Query 138852 GCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCC 138911
|| || || ||||| || ||| || | ||| |||| ||||| || || || ||||| |
Sbjct 1213095 ACTGTCATAGGGCATTCGCAGCTTCATAAACACGTCAGCCAGACCCTGGACACCCACCGC 1213154
Query 138912 GACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATC 138971
| || ||||| || || |||| || ||| | | || || ||| |||| | ||
Sbjct 1213155 AATCGGTCGATGCCGTTTGTTGGACGTTTCTGCCTCCTTGACGGGGTAACAGTTGGCCTC 1213214
Query 138972 GATGAT 138977
|||||
Sbjct 1213215 AATGAT 1213220
>seq4
Length=1325655
Score = 105 bits (116), Expect = 6e-18
Identities = 177/256 (69%), Gaps = 0/256 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || || || |||||||| ||||| || || || || || | ||
Sbjct 386586 ATGCAGATCTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 386645
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| ||||| || ||||| || || || ||
Sbjct 386646 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAG 386705
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || | ||||| ||||| || ||||| ||||| ||| | | || || || |||
Sbjct 386706 CAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTACAAC 386765
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCCA 24943
|| || ||||| || || || || | || ||||| | || || || || | ||| |
Sbjct 386766 ATCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCGACTCCGAGGTGGTGGTAAGAAGCGA 386825
Query 24944 ACGAAAGACGTCGACA 24959
| ||| | ||| |||
Sbjct 386826 AAGAAGAAGGTCTACA 386841
>seq14
Length=605277
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || || || || || || || || || ||||| || || || ||
Sbjct 299935 ATGCAGATCTTTGTCAAGACCCTGACTGGAAAGACCATCACTCTCGAGGTTGAGTCCTCC 299876
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||| || ||||| || ||||| || || || ||
Sbjct 299875 GACACCATTGACAATGTCAAGTCTAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAG 299816
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || |||| ||||| || || ||||| ||||| ||| | | || || || |||
Sbjct 299815 CAGCGACTGATTTTTGCTGGAAAGCAGCTTGAGGACGGCCGAACCCTCTCTGACTACAAC 299756
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912
|| || ||||| || || || || ||||
Sbjct 299755 ATCCAGAAGGAGTCCACTCTCCATCTGGT 299727
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449897352556320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |