Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1 149 6e-31 seq4 105 6e-18 seq14 93.3 4e-14 >seq1 Length=2434256 Score = 149 bits (164), Expect = 6e-31 Identities = 363/546 (66%), Gaps = 8/546 (1%) Strand=Plus/Plus Query 138436 ATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGA 138495 ||||| || ||| |||| || ||| | ||| || |||||| | || || ||||| Sbjct 1212679 ATGATTCGGTTTTTCATCTCCTCGGTCCACATGCCCAGCTTGATGAGATCTTTCATCAGC 1212738 Query 138496 TATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTG 138555 | ||| || ||| |||| || || ||| |||||||| | |||||||||| ||| Sbjct 1212739 CAATGGTTGATCACCAGAAACTCGCCTGCCTGGACTCGACGCAGGTAAATGTTGGACGTG 1212798 Query 138556 AAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTAC 138615 | |||||||| | ||||||| ||||||||||||| |||| ||| || ||||| Sbjct 1212799 TACGGCTCAAAACACTCGTTGTGGCCCAGAATCTGAGAAGTGGACGCTGTAGGCATAGGA 1212858 Query 138616 GCCACCAAAAGAGAATTCCGTAAACCGTG--AAGCTTGATTCGTTCCTTGAGCGACGACC 138673 ||||| | | || || || | |||||| || | |||| ||| ||| | || Sbjct 1212859 GCCACTAGCAACGAGTTTCGCATACCGTGTTTGGCGAGCTTCG--ACTTTAGCAGAGCCC 1212916 Query 138674 AGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTG 138733 | ||||||| || || | |||||||||| ||| |||| ||| | ||| || | Sbjct 1212917 AATCCCACAGGTCTGAGGGGGTCTTGTTCCACAAATCAAACTGCAACTTACCCTGGCTAG 1212976 Query 138734 CGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCT 138793 | |||||||| ||||| | ||||| || | || |||| |||| || |||| Sbjct 1212977 CAGGACTGCCCTCGTAGGTCTCGTAGGGTCCTAGTTCAGCAGCCAGCTCGATGGAAGCCT 1213036 Query 138794 CGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGG--GCCTCGGC 138851 || || ||| ||| || |||||| ||| | || | | |||| |||||| Sbjct 1213037 CGCAGGCGGCATGGTAGATTGTTTCGAAAATGAGAACGTTCA--ACTCGGCAGCCTCGAG 1213094 Query 138852 GCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCC 138911 || || || ||||| || ||| || | ||| |||| ||||| || || || ||||| | Sbjct 1213095 ACTGTCATAGGGCATTCGCAGCTTCATAAACACGTCAGCCAGACCCTGGACACCCACCGC 1213154 Query 138912 GACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATC 138971 | || ||||| || || |||| || ||| | | || || ||| |||| | || Sbjct 1213155 AATCGGTCGATGCCGTTTGTTGGACGTTTCTGCCTCCTTGACGGGGTAACAGTTGGCCTC 1213214 Query 138972 GATGAT 138977 ||||| Sbjct 1213215 AATGAT 1213220 >seq4 Length=1325655 Score = 105 bits (116), Expect = 6e-18 Identities = 177/256 (69%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || |||||||| ||||| || || || || || | || Sbjct 386586 ATGCAGATCTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 386645 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || ||||| || || || || Sbjct 386646 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAG 386705 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| ||||| || ||||| ||||| ||| | | || || || ||| Sbjct 386706 CAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTACAAC 386765 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCCA 24943 || || ||||| || || || || | || ||||| | || || || || | ||| | Sbjct 386766 ATCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCGACTCCGAGGTGGTGGTAAGAAGCGA 386825 Query 24944 ACGAAAGACGTCGACA 24959 | ||| | ||| ||| Sbjct 386826 AAGAAGAAGGTCTACA 386841 >seq14 Length=605277 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || ||||| || || || || Sbjct 299935 ATGCAGATCTTTGTCAAGACCCTGACTGGAAAGACCATCACTCTCGAGGTTGAGTCCTCC 299876 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || ||||| || || || || Sbjct 299875 GACACCATTGACAATGTCAAGTCTAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAG 299816 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||| ||||| || || ||||| ||||| ||| | | || || || ||| Sbjct 299815 CAGCGACTGATTTTTGCTGGAAAGCAGCTTGAGGACGGCCGAACCCTCTCTGACTACAAC 299756 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| || || || || |||| Sbjct 299755 ATCCAGAAGGAGTCCACTCTCCATCTGGT 299727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897352556320