Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3 230 4e-54 seq24 152 8e-31 seq11 116 6e-20 seq18 111 2e-18 seq2 96.9 5e-14 seq9 87.8 3e-11 >seq3 Length=1361780 Score = 230 bits (254), Expect = 4e-54 Identities = 250/331 (76%), Gaps = 3/331 (1%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| ||| || | |||||| ||| ||||||||||||||| || ||||| Sbjct 14897 ACCCTCGTCTCGAGAAATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGACCTCGCTT 14838 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||||| |||| ||| ||||||||||| ||||||||||||||||| Sbjct 14837 CTTGAGCCAGAAGATGGAGGCGAAAGAGCCTGAGAAAAAGATACCCTCGACGGCGGCAAA 14778 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | | | |||||||||| |||| ||| | |||| | | |||||||| | ||||| Sbjct 14777 GGCAATGAGCCGCTCGCCAAAGGTGGAC---TCCTCGTCGGAAATCCACTTGAGAGCCCA 14721 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 || ||||| ||| | | |||| | || ||||||||| || |||| || ||| Sbjct 14720 GTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCGTTGAACAGGTAGTTTCGCTC 14661 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 |||||||||| ||| ||||||||||| ||||||||||| || ||||||||||| || Sbjct 14660 CTTGGGGTCCTTGATGTATGTGTCGATGAGCAGCGAGTAGGTTTCCGAGTGGATGTTCTC 14601 Query 794640 GATGGCGATCTGGAAGCCATAAAAGCAGTTG 794670 || |||||||||||| || ||||| ||| Sbjct 14600 CATCATGATCTGGAAGCCGTAGAAGCACTTG 14570 Score = 127 bits (140), Expect = 3e-23 Identities = 230/330 (70%), Gaps = 10/330 (3%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 ||||||| ||||| || ||| || ||| |||||| ||||||||||| || | | Sbjct 15219 TGACGCCAGCCTTCTGGTAGTCGGAGACTCGCTTCTCGAAGAAGTTGGTCTTACCGGCCA 15160 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | ||| ||||||| | |||| ||| | |||| Sbjct 15159 GAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGAGTTGTAGACCTTGGTGTTGCCGA 15100 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | ||||| ||||||||||| || |||||||||||||||||||| |||||||| Sbjct 15099 GAGCAACCAGCAGTCGGTCGGCGACAAACTCAATGTACTGGCACATGAGCTTGGCGTTCA 15040 Query 794071 TGCCGATGAGCGCCAC-GGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 |||||| || |||| |||||| | ||| | | ||||| | |||||| | || ||| Sbjct 15039 TGCCGAGCAG-ACCACAGGGCAGAGCGTCGGTCAGGAACTCCTGCTCGATGCCAACAGCC 14981 Query 794130 TCGATGATGATCTGCCTGGGCA--CGTC--GGACGACGGCTTGTCGACGAGCATCGTGTA 794185 |||| |||| | ||| | || | || ||| | | || |||| | | | | | Sbjct 14980 TCGACAATGA-CGTCCTCGACAATCTTCTTGGAGGGTCGGTTCTCGAGGTG---AGAGAA 14925 Query 794186 GAGCAGGCAGGCAAAGTCGCAATGCAGACC 794215 |||||| |||||||||||| |||||||| Sbjct 14924 GAGCAGACAGGCAAAGTCGGTGTGCAGACC 14895 >seq24 Length=170883 Score = 152 bits (168), Expect = 8e-31 Identities = 326/489 (67%), Gaps = 15/489 (3%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||| || || || || |||| ||| |||| || ||||||||||| | |||||||| Sbjct 95780 CTGGTCCACGTATCGGGCAGTGTTGTTGTAGACACGCAGCATGGGCACGATACCGTTGGA 95721 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||||||||| || | ||||| ||| | ||| || | ||||| || | || Sbjct 95720 GGTTCCGTTGGTGCCGGCAATGTAGGAGCCGGTGGCTCGGATGTTGTGGATGGAGAGACC 95661 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| ||||| || | |||||| || || || || | || || || ||||||||||| || Sbjct 95660 GATACCGCCAGCAGACTTGGAAATCAGAGCACAGGTCTTGAGGGTATCGTAGATGCCGTC 95601 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| |||||| ||||||||| | || || |||||||| | || || | | || || Sbjct 95600 GATGGAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGGGGCTGGGGGGTTCC 95541 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 || ||| |||| ||||| | || || | ||| || |||||| | |||||| Sbjct 95540 AGCGTTGTAGAGGGTGGGGGAAGCGTGGGTAAAGTACTTCTGAGACATGTAGTTGTAGGT 95481 Query 2073840 GGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGAC 2073899 ||| | || || | |||| || || | | |||| || || Sbjct 95480 CTCGATGGCTCGGGC------------AATGTCGTCA---CCGTGGATTCCGACGGACAC 95436 Query 2073900 GCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTAGGA 2073959 ||||||||||| | ||||||||||||| | || || || || |||||| | Sbjct 95435 TCGCATGATCATCTGCTGGGGTCGCTCGGCAACAGCTCCGTTGACTCGCAACAGGTATGC 95376 Query 2073960 CCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGATGGC 2074019 || |||||| | ||||||||| ||||| | ||| || |||| | | ||||| Sbjct 95375 TCGCTCCAGGGTTTTAAAGCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGTAGAGAATGGC 95316 Query 2074020 GGCGTCGAG 2074028 | ||| ||| Sbjct 95315 GCCGTTGAG 95307 Score = 89.7 bits (98), Expect = 8e-12 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 2071781 CGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGC 2071840 || |||||| | |||| ||| ||||| |||| ||||| | ||| | ||| ||| Sbjct 96012 CGTCGCCGTAGACGTCGTCCAGACCGGGACACTCGTTGGGGCACATGAGAGTCCACTCGG 95953 Query 2071841 CGCCAGTCACCACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGC 2071900 || | | || || ||| ||||| ||| |||||||| | || || || | Sbjct 95952 CGTTCTGCTCGACTCGCTCCATGAACAGATCGGGGATCCACAGGGCCAGGAACAGGTCTC 95893 Query 2071901 GCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGG 2071960 | || || |||||||||| |||||||||||| ||| ||| | |||| || |||| Sbjct 95892 GGGCTCGAATCTCCTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGATGTCGT 95833 Query 2071961 CGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||||||| ||||| ||||| ||||||||| || |||||| ||| || Sbjct 95832 CGTGCCAGGGCTCAAGGTACATGGCAAAGGCTCCGGGTCGCTTGTTGCCTCC 95781 >seq11 Length=998753 Score = 116 bits (128), Expect = 6e-20 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 2035632 TTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGC 2035691 |||||| | || || ||||||||||||| ||||||||||| || || || |||| ||| Sbjct 258020 TTTGAGATTATTCTGACCGCCAACTACCTGGACATCAAGCCTCTGCTGGACGTGGGCTGC 258079 Query 2035692 AAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAAC 2035751 ||||||||||||||| | |||||||||||| | |||||||| || || ||||| ||| Sbjct 258080 AAGACCGTGGCCAACATGATCAAGGGCAAGACCCCCGAGGAGATTCGACGAACCTTCAAC 258139 Query 2035752 AT 2035753 || Sbjct 258140 AT 258141 >seq18 Length=471259 Score = 111 bits (122), Expect = 2e-18 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 1485504 GGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGT 1485563 ||||||| ||||||| || ||| | | ||| || || ||||||||||||||||| || | Sbjct 312103 GGCGTGCTTGGCCAGCTCACCGGGGAGGATAAGTCGGACGGCGGTCTGGATCTCTCGAGA 312162 Query 1485564 GCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCG-GCCGGCCTCGGTGCCGATGCGGT 1485622 ||| ||| |||| | || | | || || | |||||||||| | | || | Sbjct 312163 AGTGATGGTGGACTTCTTGGT-GTAGGTGGCAAGCTTGGAGGCCTCGGTGGCAACTCGCT 312221 Query 1485623 CGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGT 1485682 ||| || ||||| || || ||||||||||| ||||| | | | ||||||| || || Sbjct 312222 CGAAGATATCGTTAACGAAGGAGTTCATGATGGACATGGCTCGGGTGGAGATACCAGTGT 312281 Query 1485683 CGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 ||||||| |||||| ||||||||||| Sbjct 312282 CGGGGTGGGTCTGCTTCAGCACCTTGTA 312309 >seq2 Length=1754098 Score = 96.9 bits (106), Expect = 5e-14 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 1761238 CTCAAGCGAGGTCTCTTTTTCGCCCATCGCGGCCTTGACGACCTCTTGGACGCCGTCGAG 1761297 ||||||||||| |||||||| || | || | || | | || | ||| | |||| Sbjct 1030697 CTCAAGCGAGGCGTCTTTTTCTCCGAGCGAGATCTCACCAAGATCCTCGACCGCTACGAG 1030638 Query 1761298 GCCGGCCAGCCGTTCTACCTCTACACGCGCAGGGGTCCCTCGTCCGAGTCGC-TCCACCT 1761356 ||| ||||||| | ||| |||||| || |||| ||||| || || | || | ||||| Sbjct 1030637 CAGGGCAAGCCGTTTTTCCTGTACACGGGCCGGGGCCCCTCTTCGGA-TAGCATGCACCT 1030579 Query 1761357 CGGCCACATGATTCCGTTTCTCTTTTGCCGCTACCTCCAGGAGGCCTTTGGCGTGCCTTT 1761416 |||||||||| |||||| |||| | | || ||||| | |||| ||||||| | Sbjct 1030578 GGGCCACATGACGCCGTTTGTCTTCACCAAGTGGCTGCAGGACGTGTTTGACGTGCCTCT 1030519 Query 1761417 GGTCGTACAGATGGCCGACGACGCCAAGTTTCTGTACAAG 1761456 ||| | || || ||||||||| ||||| ||| |||| Sbjct 1030518 GGTGATTGAGCTGACCGACGACGAAAAGTTCTTGTTCAAG 1030479 >seq9 Length=1074676 Score = 87.8 bits (96), Expect = 3e-11 Identities = 131/183 (72%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 429633 ACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGAG 429692 |||||||| || |||||| | |||||| ||||||||||||| || ||||| ||||| Sbjct 875748 ACCTTCCGACTGAACCTGTCGGTGACGTCGCCCTACAACGCCGATTTCGACGGAGACGAA 875807 Query 429693 ATGAACCTGCACGTGCCCCAGTCGGAGATGGCACGCGCCGA--AGTCGC-CCACACCATG 429749 |||||| |||| ||||| ||||| ||| | || ||||| ||||| | |||| Sbjct 875808 ATGAACTTGCATGTGCCTCAGTCCGAGGAAACTCGAGCCGAGCTGTCGCAGCTGTGCATG 875867 Query 429750 GGCGTGGCCCTCAAGGCCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGGCTCGTGATG 429809 ||| | || || ||||| || ||| | ||||||||| |||| || | ||| | Sbjct 875868 ---GTGCCTCTGCAGATTGTGTCCCCTCAGTCTAACAAGCCCGTCATGGGTATTGTGCAG 875924 Query 429810 GAC 429812 ||| Sbjct 875925 GAC 875927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916241719519316