Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01]
44 sequences; 20,877,144 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq3 230 4e-54
seq24 152 8e-31
seq11 116 6e-20
seq18 111 2e-18
seq2 96.9 5e-14
seq9 87.8 3e-11
>seq3
Length=1361780
Score = 230 bits (254), Expect = 4e-54
Identities = 250/331 (76%), Gaps = 3/331 (1%)
Strand=Plus/Minus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||| ||||| ||| || | |||||| ||| ||||||||||||||| || |||||
Sbjct 14897 ACCCTCGTCTCGAGAAATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGACCTCGCTT 14838
Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459
||||||||| ||||||| |||| ||| ||||||||||| |||||||||||||||||
Sbjct 14837 CTTGAGCCAGAAGATGGAGGCGAAAGAGCCTGAGAAAAAGATACCCTCGACGGCGGCAAA 14778
Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519
| | | |||||||||| |||| ||| | |||| | | |||||||| | |||||
Sbjct 14777 GGCAATGAGCCGCTCGCCAAAGGTGGAC---TCCTCGTCGGAAATCCACTTGAGAGCCCA 14721
Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579
|| ||||| ||| | | |||| | || ||||||||| || |||| || |||
Sbjct 14720 GTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCGTTGAACAGGTAGTTTCGCTC 14661
Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639
|||||||||| ||| ||||||||||| ||||||||||| || ||||||||||| ||
Sbjct 14660 CTTGGGGTCCTTGATGTATGTGTCGATGAGCAGCGAGTAGGTTTCCGAGTGGATGTTCTC 14601
Query 794640 GATGGCGATCTGGAAGCCATAAAAGCAGTTG 794670
|| |||||||||||| || ||||| |||
Sbjct 14600 CATCATGATCTGGAAGCCGTAGAAGCACTTG 14570
Score = 127 bits (140), Expect = 3e-23
Identities = 230/330 (70%), Gaps = 10/330 (3%)
Strand=Plus/Minus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
||||||| ||||| || ||| || ||| |||||| ||||||||||| || | |
Sbjct 15219 TGACGCCAGCCTTCTGGTAGTCGGAGACTCGCTTCTCGAAGAAGTTGGTCTTACCGGCCA 15160
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
| ||||| |||||| | ||| ||||||| | |||| ||| | ||||
Sbjct 15159 GAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGAGTTGTAGACCTTGGTGTTGCCGA 15100
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
| | | ||||| ||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 15099 GAGCAACCAGCAGTCGGTCGGCGACAAACTCAATGTACTGGCACATGAGCTTGGCGTTCA 15040
Query 794071 TGCCGATGAGCGCCAC-GGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129
|||||| || |||| |||||| | ||| | | ||||| | |||||| | || |||
Sbjct 15039 TGCCGAGCAG-ACCACAGGGCAGAGCGTCGGTCAGGAACTCCTGCTCGATGCCAACAGCC 14981
Query 794130 TCGATGATGATCTGCCTGGGCA--CGTC--GGACGACGGCTTGTCGACGAGCATCGTGTA 794185
|||| |||| | ||| | || | || ||| | | || |||| | | | | |
Sbjct 14980 TCGACAATGA-CGTCCTCGACAATCTTCTTGGAGGGTCGGTTCTCGAGGTG---AGAGAA 14925
Query 794186 GAGCAGGCAGGCAAAGTCGCAATGCAGACC 794215
|||||| |||||||||||| ||||||||
Sbjct 14924 GAGCAGACAGGCAAAGTCGGTGTGCAGACC 14895
>seq24
Length=170883
Score = 152 bits (168), Expect = 8e-31
Identities = 326/489 (67%), Gaps = 15/489 (3%)
Strand=Plus/Minus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
|||||| || || || || |||| ||| |||| || ||||||||||| | ||||||||
Sbjct 95780 CTGGTCCACGTATCGGGCAGTGTTGTTGTAGACACGCAGCATGGGCACGATACCGTTGGA 95721
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
||||||||||| || | ||||| ||| | ||| || | ||||| || | ||
Sbjct 95720 GGTTCCGTTGGTGCCGGCAATGTAGGAGCCGGTGGCTCGGATGTTGTGGATGGAGAGACC 95661
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
||| ||||| || | |||||| || || || || | || || || ||||||||||| ||
Sbjct 95660 GATACCGCCAGCAGACTTGGAAATCAGAGCACAGGTCTTGAGGGTATCGTAGATGCCGTC 95601
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779
||| |||||| ||||||||| | || || |||||||| | || || | | || ||
Sbjct 95600 GATGGAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGGGGCTGGGGGGTTCC 95541
Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839
|| ||| |||| ||||| | || || | ||| || |||||| | ||||||
Sbjct 95540 AGCGTTGTAGAGGGTGGGGGAAGCGTGGGTAAAGTACTTCTGAGACATGTAGTTGTAGGT 95481
Query 2073840 GGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGAC 2073899
||| | || || | |||| || || | | |||| || ||
Sbjct 95480 CTCGATGGCTCGGGC------------AATGTCGTCA---CCGTGGATTCCGACGGACAC 95436
Query 2073900 GCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCGCACCTTGGTCAGGTAGGA 2073959
||||||||||| | ||||||||||||| | || || || || |||||| |
Sbjct 95435 TCGCATGATCATCTGCTGGGGTCGCTCGGCAACAGCTCCGTTGACTCGCAACAGGTATGC 95376
Query 2073960 CCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGATGGC 2074019
|| |||||| | ||||||||| ||||| | ||| || |||| | | |||||
Sbjct 95375 TCGCTCCAGGGTTTTAAAGCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGTAGAGAATGGC 95316
Query 2074020 GGCGTCGAG 2074028
| ||| |||
Sbjct 95315 GCCGTTGAG 95307
Score = 89.7 bits (98), Expect = 8e-12
Identities = 159/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 2071781 CGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGC 2071840
|| |||||| | |||| ||| ||||| |||| ||||| | ||| | ||| |||
Sbjct 96012 CGTCGCCGTAGACGTCGTCCAGACCGGGACACTCGTTGGGGCACATGAGAGTCCACTCGG 95953
Query 2071841 CGCCAGTCACCACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGC 2071900
|| | | || || ||| ||||| ||| |||||||| | || || || |
Sbjct 95952 CGTTCTGCTCGACTCGCTCCATGAACAGATCGGGGATCCACAGGGCCAGGAACAGGTCTC 95893
Query 2071901 GCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGG 2071960
| || || |||||||||| |||||||||||| ||| ||| | |||| || ||||
Sbjct 95892 GGGCTCGAATCTCCTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGATGTCGT 95833
Query 2071961 CGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012
||||||| ||||| ||||| ||||||||| || |||||| ||| ||
Sbjct 95832 CGTGCCAGGGCTCAAGGTACATGGCAAAGGCTCCGGGTCGCTTGTTGCCTCC 95781
>seq11
Length=998753
Score = 116 bits (128), Expect = 6e-20
Identities = 99/122 (81%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 2035632 TTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGC 2035691
|||||| | || || ||||||||||||| ||||||||||| || || || |||| |||
Sbjct 258020 TTTGAGATTATTCTGACCGCCAACTACCTGGACATCAAGCCTCTGCTGGACGTGGGCTGC 258079
Query 2035692 AAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAAC 2035751
||||||||||||||| | |||||||||||| | |||||||| || || ||||| |||
Sbjct 258080 AAGACCGTGGCCAACATGATCAAGGGCAAGACCCCCGAGGAGATTCGACGAACCTTCAAC 258139
Query 2035752 AT 2035753
||
Sbjct 258140 AT 258141
>seq18
Length=471259
Score = 111 bits (122), Expect = 2e-18
Identities = 151/208 (73%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 1485504 GGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGT 1485563
||||||| ||||||| || ||| | | ||| || || ||||||||||||||||| || |
Sbjct 312103 GGCGTGCTTGGCCAGCTCACCGGGGAGGATAAGTCGGACGGCGGTCTGGATCTCTCGAGA 312162
Query 1485564 GCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCG-GCCGGCCTCGGTGCCGATGCGGT 1485622
||| ||| |||| | || | | || || | |||||||||| | | || |
Sbjct 312163 AGTGATGGTGGACTTCTTGGT-GTAGGTGGCAAGCTTGGAGGCCTCGGTGGCAACTCGCT 312221
Query 1485623 CGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGT 1485682
||| || ||||| || || ||||||||||| ||||| | | | ||||||| || ||
Sbjct 312222 CGAAGATATCGTTAACGAAGGAGTTCATGATGGACATGGCTCGGGTGGAGATACCAGTGT 312281
Query 1485683 CGGGGTGCACCTGCTTGAGCACCTTGTA 1485710
||||||| |||||| |||||||||||
Sbjct 312282 CGGGGTGGGTCTGCTTCAGCACCTTGTA 312309
>seq2
Length=1754098
Score = 96.9 bits (106), Expect = 5e-14
Identities = 155/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 1761238 CTCAAGCGAGGTCTCTTTTTCGCCCATCGCGGCCTTGACGACCTCTTGGACGCCGTCGAG 1761297
||||||||||| |||||||| || | || | || | | || | ||| | ||||
Sbjct 1030697 CTCAAGCGAGGCGTCTTTTTCTCCGAGCGAGATCTCACCAAGATCCTCGACCGCTACGAG 1030638
Query 1761298 GCCGGCCAGCCGTTCTACCTCTACACGCGCAGGGGTCCCTCGTCCGAGTCGC-TCCACCT 1761356
||| ||||||| | ||| |||||| || |||| ||||| || || | || | |||||
Sbjct 1030637 CAGGGCAAGCCGTTTTTCCTGTACACGGGCCGGGGCCCCTCTTCGGA-TAGCATGCACCT 1030579
Query 1761357 CGGCCACATGATTCCGTTTCTCTTTTGCCGCTACCTCCAGGAGGCCTTTGGCGTGCCTTT 1761416
|||||||||| |||||| |||| | | || ||||| | |||| ||||||| |
Sbjct 1030578 GGGCCACATGACGCCGTTTGTCTTCACCAAGTGGCTGCAGGACGTGTTTGACGTGCCTCT 1030519
Query 1761417 GGTCGTACAGATGGCCGACGACGCCAAGTTTCTGTACAAG 1761456
||| | || || ||||||||| ||||| ||| ||||
Sbjct 1030518 GGTGATTGAGCTGACCGACGACGAAAAGTTCTTGTTCAAG 1030479
>seq9
Length=1074676
Score = 87.8 bits (96), Expect = 3e-11
Identities = 131/183 (72%), Gaps = 6/183 (3%)
Strand=Plus/Plus
Query 429633 ACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGAG 429692
|||||||| || |||||| | |||||| ||||||||||||| || ||||| |||||
Sbjct 875748 ACCTTCCGACTGAACCTGTCGGTGACGTCGCCCTACAACGCCGATTTCGACGGAGACGAA 875807
Query 429693 ATGAACCTGCACGTGCCCCAGTCGGAGATGGCACGCGCCGA--AGTCGC-CCACACCATG 429749
|||||| |||| ||||| ||||| ||| | || ||||| ||||| | ||||
Sbjct 875808 ATGAACTTGCATGTGCCTCAGTCCGAGGAAACTCGAGCCGAGCTGTCGCAGCTGTGCATG 875867
Query 429750 GGCGTGGCCCTCAAGGCCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGGCTCGTGATG 429809
||| | || || ||||| || ||| | ||||||||| |||| || | ||| |
Sbjct 875868 ---GTGCCTCTGCAGATTGTGTCCCCTCAGTCTAACAAGCCCGTCATGGGTATTGTGCAG 875924
Query 429810 GAC 429812
|||
Sbjct 875925 GAC 875927
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916241719519316
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |