Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01]
44 sequences; 20,877,144 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq4 118 7e-22
seq14 116 2e-21
seq3 116 2e-21
>seq4
Length=1325655
Score = 118 bits (130), Expect = 7e-22
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| || || || | ||| ||||||||| ||||| ||||| || ||| | || | ||
Sbjct 386798 CAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCGTC 386739
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || ||||| ||||||||||| ||||| |||||||| | || | |||||||||||
Sbjct 386738 CTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTC 386679
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || || |||||| | || | || | ||| || |||| ||| || ||
Sbjct 386678 CTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGT 386619
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||| || || |||||||| ||||||||||||||
Sbjct 386618 CTTACCGGTAAGGGTCTTGACAAAGATCTGCAT 386586
>seq14
Length=605277
Score = 116 bits (128), Expect = 2e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| ||||| || | ||| ||||||||| ||||| ||||| || ||| | || | ||
Sbjct 299724 AGAACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCGTCC 299783
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || |||||||| || || |||||||| |||||||| | || | |||||||||||
Sbjct 299784 TCAAGCTGCTTTCCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCC 299843
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || ||||| | || | || || ||| || || | || ||||||
Sbjct 299844 TGAATCTTAGACTTGACATTGTCAATGGTGTCGGAGGACTCAACCTCGAGAGTGATGGTC 299903
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || |||||||| ||||||||||||||
Sbjct 299904 TTTCCAGTCAGGGTCTTGACAAAGATCTGCAT 299935
Score = 93.3 bits (102), Expect = 3e-14
Identities = 128/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| || ||||| | ||| |||||||| ||||| ||||| || ||| | || | ||
Sbjct 298778 AGCACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGACCGTCC 298837
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| ||||| ||||||||||| ||||| |||||||| | || | |||||||||||
Sbjct 298838 TCCAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCC 298897
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || || |||||| | || | ||| | |||||| |||| ||| |||||
Sbjct 298898 TGAATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCGACCTCAAGGGTAATGGT 298956
Score = 89.7 bits (98), Expect = 3e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| ||||| |||| ||| ||||||||| ||||| || || || || | || ||||
Sbjct 299952 AGAACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGAGAGAGTTCGACCATCC 300011
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || |||||||| ||||| |||||||| |||||||| | || | |||||||||||
Sbjct 300012 TCAAGCTGCTTTCCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATACCCTCCTTGTC 300070
>seq3
Length=1361780
Score = 116 bits (128), Expect = 2e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| ||||| || | ||| ||||||||| ||||| ||||| || || | || | ||
Sbjct 557857 CAGAACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCGGCCGTC 557798
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || ||||| |||||||| |||||||| |||||||| | || | |||||||||||
Sbjct 557797 CTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGGATTCCCTCCTTGTC 557738
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || || |||||| | || | ||| || ||| || || | ||| || ||
Sbjct 557737 CTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACCTCGAGGGTGATAGT 557678
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCA 34976
||| || || |||||||| |||||||| ||||
Sbjct 557677 CTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 557646
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325692625347236
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |