Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3 315 1e-79 seq24 158 2e-32 seq18 98.7 1e-14 >seq3 Length=1361780 Score = 315 bits (348), Expect = 1e-79 Identities = 418/570 (73%), Gaps = 18/570 (3%) Strand=Plus/Plus Query 1455715 CGAGCCGCTGCTGCGCGATAAC--CCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAG 1455772 |||||| ||||| || ||| |||| || ||||| || |||||||||| ||||| Sbjct 14300 CGAGCCTCTGCTCAAGGAGAACGGCCGA--CGGTTTGTGCTCTTCCCCATCCAGTACCAT 14357 Query 1455773 CGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGA 1455832 ||| ||| | |||||| || ||||| ||||| ||||| ||||| || |||||| |||| Sbjct 14358 GAGATCTGGCAGATGTAC-AAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATCGA 14416 Query 1455833 CCTCGGCGCCGACACGGTCCACTGGGTGT--CG-CTGAGCGACGACGAGCGCCATTTCAT 1455889 |||||| |||| || | |||||| | || || | | |||||||||| ||||| Sbjct 14417 TCTCGGCAAGGACATGGGCGACTGGGAGAACCGACTCAACAACGACGAGCGATTCTTCAT 14476 Query 1455890 CAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCG 1455949 | ||||| || ||||| ||| || ||| ||| || ||||| ||||||||||| | Sbjct 14477 CTCTCACGTTCTGGCCTTCTTT-GCTGCCTCCGACGGAATCGTCAACGAGAACCTGGTGG 14535 Query 1455950 GCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCG 1456009 || || |||||||| || ||||| | || ||||| ||||||||| Sbjct 14536 AGCGATTCTCCGGCGAGGTCCAGGCTCCCGAGGCCAAGTGCTTCTACGGCTTCCAGATCA 14595 Query 1456010 CCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACC 1456069 || || ||||||||||| |||||||||||||| || |||||||| ||| ||||||||| Sbjct 14596 TGATGGAGAACATCCACTCGGAAACCTACTCGCTGCTCATCGACACATACATCAAGGACC 14655 Query 1456070 CGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGG 1456129 | ||| || |||| || ||||||||| || | || | | | ||| |||| Sbjct 14656 CCAAGGAGCGAAACTACCTGTTCAACGCCATCGAGACCATCCCCTGCATCAAGAAGAAGG 14715 Query 1456130 CCGACTGGGCGATGAAGTGGAT---CAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCT 1456186 |||||||||| | |||||||| | || ||||| || || ||||| ||||||||| Sbjct 14716 CCGACTGGGCTCTCAAGTGGATTTCCGACGAGGAG----TCCAC-CTTTGGCGAGCGGCT 14770 Query 1456187 CGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTG 1456245 | | | |||||||| ||||||||| ||||||||||| ||| |||| | ||||||| || Sbjct 14771 CATTGCCTTTGCCGCCGTCGAGGGTATCTTTTTCTCAGGCTCTTTCGCCTCCATCTTCTG 14830 Query 1456246 GCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||||||| || ||||||||||| || Sbjct 14831 GCTCAAGAAGCGAGGTCTCATGCCCGGCCT 14860 Score = 125 bits (138), Expect = 1e-22 Identities = 230/329 (70%), Gaps = 6/329 (2%) Strand=Plus/Plus Query 1456448 GGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACC 1456507 ||| ||||| ||||||||||||||||||| | | |||| ||| || || | Sbjct 14895 GGTCTGCACACCGACTTTGCCTGTCTGCTCTTCTCTCACCTCGAGAACCGACCCTCCAAG 14954 Query 1456508 GACGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAG 1456567 | | | || | |||| |||||||| || | |||||| | ||||| | | ||| Sbjct 14955 AAGATTGTCGAGGACGTCATTGTCGAGGCTGTTGGCATCGAGCAGGAGTTCCTGACCGAC 15014 Query 1456568 TCGCTGCCG-GTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAAT 1456626 | ||||| |||| || ||||||||||||||| |||||||||||||||||||| | Sbjct 15015 GCTCTGCCCTGTGGT-CTGCTCGGCATGAACGCCA-AGCTCATGTGCCAGTACATTG-AG 15071 Query 1456627 TTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAA 1456686 |||||||||||||| ||||| | || |||||| | ||| |||| | |||| Sbjct 15072 TTTGTCGCCGACCGACTGCTGGTTGCTCTCGGCAAC-ACCAAGGTCTACAACTCCACCAA 15130 Query 1456687 CCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCG 1456746 ||| ||| | |||||| ||||| || | || ||||||||||| |||||| || Sbjct 15131 CCCCTTCGACTTCATGGAGAACATCTCTCTGGCCGGTAAGACCAACTTCTTCGAGAAGCG 15190 Query 1456747 CGT-GGCGAGTACGCCAAGGCCGGCGTCA 1456774 || ||| ||| ||||| ||||||| Sbjct 15191 AGTCTCCGACTACCAGAAGGCTGGCGTCA 15219 Score = 89.7 bits (98), Expect = 7e-12 Identities = 265/399 (66%), Gaps = 31/399 (8%) Strand=Plus/Minus Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTG-TTGCA 332931 || ||||| ||||| || || ||| | |||||| |||| | ||| | || || || Sbjct 263879 AATCGCAGAATGGCGCATCGAGACTGGATGGCCTCAATGATC-TTGTTGCTCTGGTTACA 263821 Query 332932 GGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTG 332991 ||| | ||| || || ||||| | | | | ||||||||| | ||| || | ||| Sbjct 263820 GGCAAAGGCGAATCGGGTCGTGTCTGAGTACAGTTCCATGGTTCGCTTGAGCGCATTTTG 263761 Query 332992 GGCCGCCGGCG-TGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCG 333050 ||| |||||| | | | ||||||||| || || |||||||||||||| || | | Sbjct 263760 GGCT-CCGGCGGTCATACTGTCGGCCTCATCCAGAATGATGATCTTGTGCTTGCCAGGAG 263702 Query 333051 GCA-GATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTG---CGCACGACGTCCACG 333106 ||| | || ||| ||||| ||| | || |||||||| || || || || | Sbjct 263701 GCATGGTC-ACCTTTTTCTGGGCAAAG---TTCTTGATCTTGCCTCGAACCACCTCGATA 263646 Query 333107 CCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGT-------CGGCGGCCGCACC 333159 || || |||||||| |||||||| || || || || || | | | |||| || | Sbjct 263645 CCTCGATCGTCCGAGGCGTTGAGCTCCAGAACCGCATCTTTGTACAGCTGGGGCCCCAGC 263586 Query 333160 CAAGAGGACGCGCGCCAGGCACGCGATGCTC----GTGGTCTTGCCCGTGCCGGGCGGAC 333215 ||| ||| ||||| || |||| | || ||||| || | ||||| ||| Sbjct 263585 AAAG----TGCGTGCCAGACA----ATGCACCGATGTCGTCTTTCCGATACCGGGGAGAC 263534 Query 333216 CCGCCAGCAAGAGGTTGGGCATGTTGCCGTCGGCGGCCA 333254 ||| | || || ||||| ||||||||||| ||||| Sbjct 263533 CCGAAATCAGCAGATTGGGAATGTTGCCGTCCTTGGCCA 263495 >seq24 Length=170883 Score = 158 bits (174), Expect = 2e-32 Identities = 215/300 (72%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942 |||||| | |||||| ||| ||| || ||| || | ||||| |||| || || Sbjct 95481 ACCTACAACTACATGTCTCAGAAGTACTTTACCCACGCTTCCCCCACCCTCTACAACGCT 95540 Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002 || || || | || |||| |||||||| || || | ||||||||| ||| || ||| Sbjct 95541 GGAACCCCCCAGCCCCAGATGTCGTCGTGTTTCCTTGTCAACATGAAGGACGACTCCATC 95600 Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062 || |||||||| || || |||||| || || || || |||||| | || ||||| ||| Sbjct 95601 GACGGCATCTACGATACCCTCAAGACCTGTGCTCTGATTTCCAAGTCTGCTGGCGGTATC 95660 Query 260063 GGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAG 260122 ||| | || ||||| | || ||| | ||| ||||| | || ||||||||||| Sbjct 95661 GGTCTCTCCATCCACAACATCCGAGCCACCGGCTCCTACATTGCCGGCACCAACGGAACC 95720 Query 260123 TCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 |||||||| | ||||||||||| || || | ||| |||| || || ||||| |||||| Sbjct 95721 TCCAACGGTATCGTGCCCATGCTGCGTGTCTACAACAACACTGCCCGATACGTGGACCAG 95780 Score = 107 bits (118), Expect = 3e-17 Identities = 326/499 (65%), Gaps = 20/499 (4%) Strand=Plus/Plus Query 262922 TGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCA 262981 |||| |||||| |||| || || | ||||||||| ||| | || || ||||| || ||| Sbjct 96703 TGCGAAACTCGCTGCTGGTTGCTCCCATGCCCACCGCCTCCACCTCTCAGATTCTCGGCT 96762 Query 262982 ACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCG 263041 || |||| |||||| | ||| |||||| ||| | || || ||||| | |||| Sbjct 96763 TCAACGAGTGCTTCGAGCCCTACACCTCCAACATTTACTCTCGACGAGTGCTTGCTGGCG 96822 Query 263042 ACTTTACCGTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGC 263101 | || | ||||||| | ||| ||||| | |||| | | || ||||||| Sbjct 96823 AGTTCCAGATTGTCAACCCCTGGCTGCTCAAGGACCTGGTTGAGGTTGGTCTGTGGAATG 96882 Query 263102 CCGACTTTCGCGA-CCGGCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAG 263160 ||| | || ||| || | || | | || || |||||| | | | || Sbjct 96883 A-GACCATGAAGAACCGAATCGTGGCCGACAACGGATCCGTGCAGAACATCCCCAACA-- 96939 Query 263161 GAGGTGCCGCCCGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGT---GCCCAACCGG 263217 | || | || |||||| || | | |||||||||||| | || || || Sbjct 96940 ----TCCCCCAGGAGATCAAGGACCTGTACCGAACCGTGTGGGAGATTTCGCAGAAGCGA 96995 Query 263218 GTGACCATTGATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAAC 263277 | ||| || ||||| |||||||| |||||| | |||||| |||||| |||||| Sbjct 96996 AT---CATCGAGATGGCTGCCGACCGATCGCCCTTCATTGACCAGTCCCAGTCCCTCAAC 97052 Query 263278 CTGTACCTCGCCGACCCGACGGCCGAGAGCA---TCACGTCGATGCACGCCTATGCGTGG 263334 | || || ||||| || | | ||| |||| || |||||| ||| | ||| Sbjct 97053 ATTCACATCAAGGACCCCAC---CATGGGCAAGCTCACCTCCATGCACTTCTACGGCTGG 97109 Query 263335 CGTCGCGGCCTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATT 263394 || ||||||||||| |||||||| ||||| ||| | | |||||| | |||| Sbjct 97110 AAGAAGGGTCTCAAGACTGGTATGTACTACCTGCGAACCATGGCTGCTGCCGCCCCCATC 97169 Query 263395 CAATTCACCGTCGATCAGG 263413 || |||||| | ||||||| Sbjct 97170 CAGTTCACCATTGATCAGG 97188 >seq18 Length=471259 Score = 98.7 bits (108), Expect = 1e-14 Identities = 163/231 (71%), Gaps = 12/231 (5%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | |||||||||||||| |||||| |||||| || | | ||| Sbjct 312324 TACTCTTCTTACATCTACAAGGTGCTGAAGCAGACCCACCCCGACACTGGT-----ATC- 312271 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 |||| | ||||||| ||||||||||| || || ||||| || |||| || | | | Sbjct 312270 TCCACCCGAGCCATGTCCATCATGAACTCCTTCGTTAACGATATCTTCGAGCGAGTTGCC 312211 Query 725019 ACCGAGGCCGGTC---GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 ||||||||| || || || | | || || |||| ||| ||| | || ||| Sbjct 312210 ACCGAGGCC--TCCAAGCTTGCCAC-CTACACCAAGAAGTCCACCATCACTTCTCGAGAG 312154 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCC 725126 |||||||||||||| || || ||| | | ||| || ||||||| ||||||| Sbjct 312153 ATCCAGACCGCCGTCCGACTTATCCTCCCCGGTGAGCTGGCCAAGCACGCC 312103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177806956119128