Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01]
44 sequences; 20,877,144 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq4 118 1e-21
seq14 113 4e-20
seq3 91.5 1e-13
>seq4
Length=1325655
Score = 118 bits (130), Expect = 1e-21
Identities = 144/194 (74%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| || | | |||||| |||| || ||||||||||| || ||
Sbjct 386777 CTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAA 386718
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||||||||||| |||| | |||||||||| |||||| ||| | ||
Sbjct 386717 GATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 386659
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | |||||| || |||||||| | ||||| || ||||| || | || || |
Sbjct 386658 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGA 386599
Query 35724 CAAATATCTGCATT 35737
|||| |||||||||
Sbjct 386598 CAAAGATCTGCATT 386585
>seq14
Length=605277
Score = 113 bits (124), Expect = 4e-20
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| || | | |||||| |||| || |||||||| || |||||
Sbjct 299744 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCGTCCTCAAGCTGCTTTCCAGCAAA 299803
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| ||||||||||||| |||| | |||||||||| ||||| ||| | | |
Sbjct 299804 AATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGAATCTTAGACTTGACATT 299863
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | |||||| || || ||||| | ||||| || || || |||| || || ||
Sbjct 299864 GTCAATGGTGTCGGAGGACTCAACCTCGAGAGTGATGGTCTTTCCAGTCAGGGTCTTGAC 299923
Query 35725 AAATATCTGCAT 35736
||| ||||||||
Sbjct 299924 AAAGATCTGCAT 299935
Score = 86.0 bits (94), Expect = 6e-12
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
||||| || |||||||| |||| | |||||| |||| |||||||||||||| || ||
Sbjct 298799 TCCTTCTGGATGTTGTAGTCGGAAAGGGTTCGACCGTCCTCCAGCTGCTTACCGGCGAAG 298858
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652
|| | ||||||||||||| || | | |||||||||| |||||
Sbjct 298859 ATAAGTCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGAATCTT 298905
Score = 86.0 bits (94), Expect = 6e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587
|||| ||| | ||| |||||| || ||||||||||| | | ||||| | || ||
Sbjct 299955 ACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGAGAGAGTTCGACCATCCTCA 300014
Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647
|||||||| || || || |||| ||||||||||||| |||| | |||||||||| |
Sbjct 300015 AGCTGCTTTCCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGG 300074
Query 35648 ATCTT 35652
|||||
Sbjct 300075 ATCTT 300079
>seq3
Length=1361780
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| || | | ||||| |||| || |||||||| || || ||
Sbjct 557836 CTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 557777
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| ||||||||||||| || | | |||||||||| |||||| ||| | ||
Sbjct 557776 AATCAGTCGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 557718
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | ||||| || |||||||| | ||||| || || || || | || || |
Sbjct 557717 TGTCAATGGTGTCAGAGGACTCCACCTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGA 557658
Query 35724 CAAATATCTGCA 35735
|||| || ||||
Sbjct 557657 CAAAGATTTGCA 557646
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450793352063520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |