Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01]
44 sequences; 20,877,144 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq1 134 1e-26
seq24 122 9e-23
seq3 122 9e-23
seq4 120 3e-22
seq14 116 4e-21
>seq1
Length=2434256
Score = 134 bits (148), Expect = 1e-26
Identities = 548/858 (64%), Gaps = 7/858 (1%)
Strand=Plus/Minus
Query 7554 GGAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGA 7613
||||||| ||||| ||||| || | ||||| |||| || |||||| | ||| |
Sbjct 1214193 GGAACGACCCCAACATATGCTCATGAGAGTGGCTCTGGGTATCCACGGCAACGACCTCCC 1214134
Query 7614 CGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCAC 7673
| | | || || ||||| |||| | ||| |||| || |||||||| || ||
Sbjct 1214133 TAAGGTCCTCGATACTTACCAGGCTCTGTCGCTCAAAAAGTTCACACACGCTTCTCCAAC 1214074
Query 7674 CATGTTTGCCGCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCG 7733
| |||| || ||||| | | || | || || || ||| || | ||||| |
Sbjct 1214073 CCTGTTCAATGCAGGCACTCCCCGGGGCCAGCTATCGTCCTGCTTTCTGGTCGCCATGAG 1214014
Query 7734 CGAAGACAGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATA 7793
||||||| |||||||||||| ||| |||| || |||||| | ||||| ||| |
Sbjct 1214013 CGAAGACTCCATCGACGGCATCTACGACACTCTCAAAACGTGCGCCCAAATTTC-AAAGA 1213955
Query 7794 CGGC-GGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGT 7852
| || || || ||||||||| | | || || | | || || || | | ||||
Sbjct 1213954 CCGCAGGAGGCATAGGTCTGCATATCCACAACATCAGAGCTAAGGGCACCATCATCACAG 1213895
Query 7853 CCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGC 7912
| | | |||||| || || | | |||||| | || |||||||||||| | |
Sbjct 1213894 GCTCTCAGGGAAAATCCTCAGGCATTGTTCCCATGCTCCGAGTGTTCAATAACACAGCCA 1213835
Query 7913 GACATGTAGACCAGGGGGGAAA---GCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGT 7969
|| | || ||||| || || || ||| || || ||| |||| |||||||| |
Sbjct 1213834 GATACGTGGACCAAGGCGGCAACAAGCGTCCTGGAGCGTTTGCAGTCTACTTGGAGCCAT 1213775
Query 7970 GGCACGCGGACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCA 8029
|||| ||||| |||| | | | |||||||| ||| || ||| || | ||
Sbjct 1213774 GGCATGCGGATATTTTGGATTTCTTGAATCTGCGCAAAAACCACGGAGCCGAGGAAAACA 1213715
Query 8030 AAGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATT 8089
||| || ||||| || | || ||| ||||| ||||||||||| |||| | | || |
Sbjct 1213714 GAGCACGTGATCTCTTTTACGCATTATGGGTTCCCGATCTGTTCATGAAGAGAGTCGAAA 1213655
Query 8090 TCGACGCACAATGGTCGCTCATGTGCCCCGATCGTTGCCCTTTATTAAAAAACGTTTACG 8149
| || |||||||||| | || ||| | || | | | || | | |
Sbjct 1213654 GAGGCGAGAAATGGTCGCTTTTCTGTCCCAAAAAGGCTCCCGGACTGGCAGACATCTGGG 1213595
Query 8150 GTTCAAAATTTGAACAATTGTACAAACAATACGA-ACACGACGGCGCGTACGTGCGGCAA 8208
| | | || || | |||| || | ||||| | ||| || |||| ||||
Sbjct 1213594 GACCTGATTTCGACCGCAAGTACGAAGAGTACGAGTCTCGAAAGC-TGTACAACTCGCAA 1213536
Query 8209 GTGAAAGCGCGCGACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCG 8268
| | || | || ||| | || ||| | | | || | ||||| || |||
Sbjct 1213535 ATCGACGCCCAGGAGCTGTTCAAGGCGATTCTGACAAGCCAGATTGAAACTGGAGGCCCG 1213476
Query 8269 TACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATT 8328
| ||||||||| |||||| |||||||| ||| ||| || | || | ||||||||
Sbjct 1213475 TTCATGCTGTATAAAGACAGCTGCAACGCGAAATCCAACCAGAAGAATCTCGGCACCATC 1213416
Query 8329 TGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTT 8388
| |||||||||| |||| ||||| |||||| | ||||| || ||||| |||
Sbjct 1213415 AAATCGTCCAATCTGTGCACTGAGATTGTCCAGTACTCGTCTCCCGAAGAGGTGGCTGTT 1213356
Query 8389 TGCAATCTAGCGTCGGTG 8406
||||| || || || |||
Sbjct 1213355 TGCAACCTGGCTTCCGTG 1213338
>seq24
Length=170883
Score = 122 bits (134), Expect = 9e-23
Identities = 390/599 (65%), Gaps = 7/599 (1%)
Strand=Plus/Plus
Query 7525 TACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTG 7584
||| ||||| | ||||||| | || || ||| || || ||| | |||| |||
Sbjct 95379 TACCTGTTGCGAGTCAACGGAGCTGTTGCCGAGCGACCCCAGCAGATGATCATGCGAGTG 95438
Query 7585 GCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCT 7644
| || || || ||||| || ||||||| | ||| | || || ||| | ||||||
Sbjct 95439 TCCGTCGGAATCCACGGTGACGACATTGCCCGAGCCATCGAGACCTACAACTACATGTCT 95498
Query 7645 TTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCAA 7704
||| | ||||| |||||||| |||||| | | ||| || || | ||| ||
Sbjct 95499 CAGAAGTACTTTACCCACGCTTCCCCCACCCTCTACAACGCTGGAACCCCCCAGCCCCAG 95558
Query 7705 TTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACG 7764
|||| |||||||| | | | |||| || ||| |||||||||||| ||| | ||
Sbjct 95559 ATGTCGTCGTGTTTCCTTGTCAACATGAAGGACGACTCCATCGACGGCATCTACGATACC 95618
Query 7765 CTGCGCGA-TTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGA 7823
|| | || || || |||||||| | | ||||| || ||||| | | || |
Sbjct 95619 CT-CAAGACCTGTGCTCTGATTTCCAAGTCTGCTGGCGGTATCGGTCTCTCCATCCACAA 95677
Query 7824 CGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCC 7883
| | || |||| ||| | ||| | ||||||||||| ||| |||| | | |||
Sbjct 95678 CATCCGAGCCACCGGCTCCTACATTGCCGGCACCAACGGAACCTCCAACGGTATCGTGCC 95737
Query 7884 CATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGG---AAAGCGCAA 7940
|||| |||| || | ||| ||| | | ||| | || |||||||| || |||||
Sbjct 95738 CATGCTGCGTGTCTACAACAACACTGCCCGATACGTGGACCAGGGAGGCAACAAGCGACC 95797
Query 7941 AGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCT-AAATC 7999
|| ||| |||||| || | ||||| ||||||| ||||| | || ||| || | |
Sbjct 95798 CGGAGCCTTTGCCATGTACCTTGAGCCCTGGCACGACGACATCTTCG-AGTTCTGCGAGC 95856
Query 8000 TGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGCGATCTATTCTTCGGATTGTGGG 8059
|||| ||| || || || | ||| || || || ||| | | |||||
Sbjct 95857 TGCGAAAGAACCACGGAAAGGAGGAGATTCGAGCCCGAGACCTGTTCCTGGCCCTGTGGA 95916
Query 8060 TGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCC 8118
| ||||||||||| ||| ||| || | |||| | ||| | ||||||||||||
Sbjct 95917 TCCCCGATCTGTTCATGGAGCGAGTCGAGCAGAACGCCGAGTGGACTCTCATGTGCCCC 95975
>seq3
Length=1361780
Score = 122 bits (134), Expect = 9e-23
Identities = 168/234 (72%), Gaps = 1/234 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
||||||| |||||||| || || || || ||||| ||||| || ||||||||||| |
Sbjct 557871 CCTCCTCGGAGTCGCAGAACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 557812
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| || | ||| |||||||| ||||| || ||||||| |||||||| || || ||
Sbjct 557811 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGG 557752
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || || || || || ||||| ||| | ||||| || || |||||
Sbjct 557751 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACC 557692
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCA-TTTTGTT 134719
||||| || || || || || || | || || || || ||||||| | |||||
Sbjct 557691 TCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCACTATTGTT 557638
>seq4
Length=1325655
Score = 120 bits (132), Expect = 3e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| |||| |||||||| ||||| || || ||||| ||||| || ||||||||||| |
Sbjct 386812 CCACCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 386753
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| | ||| |||||||| || || || || || | |||||||| || || ||
Sbjct 386752 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 386693
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || || || || || ||||| ||| | |||||||| || |||||
Sbjct 386692 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 386633
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTT 134715
|| || || || || |||||||| | || || || || || |||||||
Sbjct 386632 TCAAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAGATCTGCATTT 386584
>seq14
Length=605277
Score = 116 bits (128), Expect = 4e-21
Identities = 160/224 (71%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 134490 CCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACG 134549
|||| |||||| | || || || || ||||| ||||| || ||||||||||| | |
Sbjct 299712 CCTCGGAGTCGGAGAACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGG 299771
Query 134550 GTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATG 134609
|| | ||| || ||||| || || |||||||||| |||||||| || || || ||
Sbjct 299772 GTTCGGCCGTCCTCAAGCTGCTTTCCAGCAAAAATCAGTCGCTGCTGGTCCGGGGGAATT 299831
Query 134610 CCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCG 134669
|| || || || ||||| || ||||| ||| | |||||||| || || || |||
Sbjct 299832 CCCTCCTTGTCCTGAATCTTAGACTTGACATTGTCAATGGTGTCGGAGGACTCAACCTCG 299891
Query 134670 AGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| ||||| || || || | || || || || || |||||
Sbjct 299892 AGAGTGATGGTCTTTCCAGTCAGGGTCTTGACAAAGATCTGCAT 299935
Score = 111 bits (122), Expect = 2e-19
Identities = 141/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| |||| |||||| | ||| ||||| || ||||||||||| || |||||||||||| |
Sbjct 298763 CCACCTCGGAGTCGGAGCACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAA 298822
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| || ||| || ||||| || || || || || | |||||||| || || ||
Sbjct 298823 AGGGTTCGACCGTCCTCCAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGG 298882
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || || ||||| || ||||| ||| | ||||| || || || ||
Sbjct 298883 ATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCAGAAGACTCGACC 298942
Query 134667 TCGAGAGTAATGGT 134680
|| || ||||||||
Sbjct 298943 TCAAGGGTAATGGT 298956
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505398122030880
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