Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1 123 2e-23 seq3 96.9 3e-15 seq18 82.4 6e-11 >seq1 Length=2434256 Score = 123 bits (136), Expect = 2e-23 Identities = 286/425 (67%), Gaps = 11/425 (3%) Strand=Plus/Plus Query 131613 TGGGACACATTAGCGACCA---CACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCG 131669 ||||||| | |||||||| | |||| ||| ||| |||| |||||| |||| ||| | Sbjct 1213625 TGGGACAGAAAAGCGACCATTTCTCGCC--TCT-TTCGACTCTCTTCATGAACAGATCGG 1213681 Query 131670 GCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttt 131729 | |||||||| ||||| || ||||| | ||| | || || || | || |||| Sbjct 1213682 GAACCCATAATGCGTAAAAGAGATCACGTGCTCTGTTTTCCTCGGCTCCGTGGTTTTTGC 1213741 Query 131730 tCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGC 131789 || ||| || || |||||||| ||||||||||| || ||||| || ||||| | || | Sbjct 1213742 GCAGATTCAAGAAATCCAAAATATCCGCATGCCATGGCTCCAAGTAGACTGCAAACGCTC 1213801 Query 131790 CTTTGCGC---TTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACA 131846 | ||| || |||||||| | || | | | |||| ||| | || || | || Sbjct 1213802 CAGGACGCTTGTTGCCGCCTTGGTCCACGTATCTGGCTGTGTTATTGAACACTCGGAGCA 1213861 Query 131847 TGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGA 131906 |||| | | || || ||||| | | || | ||| | |||| || ||||||| Sbjct 1213862 TGGGAACAATGCCTGAGGATTTTCCCTGAGAGCCTGTGATGATGGTGCCCTTAGCTCTGA 1213921 Query 131907 TTTTGTGAACGTTGAGTCCAATACCTCC-GCCGTATTTAGAGATTAGTGCGCATTTGGTT 131965 | ||||| | | || || || ||||| || || ||| || ||| | ||||| | | Sbjct 1213922 TGTTGTGGATATGCAGACCTATGCCTCCTGCGGTCTTT-GAAATTTGGGCGCACGTTTTG 1213980 Query 131966 AGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCAAGAGGAC 132025 ||||||| ||||| || || | | ||| || ||| |||| | |||||| || || Sbjct 1213981 AGAGTGTCGTAGATGCCGTCGATGGAGTCTTCGCTCATGGCGACCAGAAAGCAGGACGAT 1214040 Query 132026 AACTG 132030 | ||| Sbjct 1214041 AGCTG 1214045 >seq3 Length=1361780 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | |||| |||| ||| | || || || || || || |||||||| Sbjct 557871 CCTCCTCGGAGTCGCAGAACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 557812 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || |||| |||||||| || |||||| |||| || ||||| || ||||| || Sbjct 557811 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGTCGCTGCTGGTCCGGGGGG 557752 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||||| || | | | || | ||||| | || || || Sbjct 557751 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACC 557692 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCA 27246 || || || |||| ||||| || || || || ||||||||||||| Sbjct 557691 TCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 557646 >seq18 Length=471259 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/132 (75%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 96897 GGGTTTCATGTACACGAGTTTGGCGACACGAGCAACGGCTGCACTTCGGCCGGCGAACAT 96956 || || || || ||||||||||| |||| | |||||||||||| || |||||| || Sbjct 53632 GGATTCCACGTCCACGAGTTTGGAGACAACACCAACGGCTGCACCTCTGCCGGCCCCCAC 53691 Query 96957 TTCAA-CCCTACATTGCAAAATCACGGCGCACCCAGCGCCATTGAACGCCACGTTGGTGA 97015 ||||| |||| || | | || ||||| | ||||| || | || || ||||||||||| Sbjct 53692 TTCAACCCCTTCA-AGAAGAACCACGGTGGACCCACCGACTCCGAGCGACACGTTGGTGA 53750 Query 97016 TCTGGGCAACGT 97027 || || ||||| Sbjct 53751 CCTCGGAAACGT 53762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934172128928