Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01] 44 sequences; 20,877,144 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq24 279 6e-70 seq3 129 7e-25 >seq24 Length=170883 Score = 279 bits (308), Expect = 6e-70 Identities = 1155/1792 (64%), Gaps = 69/1792 (4%) Strand=Plus/Minus Query 110331 TGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTC 110390 ||||||| || || ||| ||| | | ||| || |||||||| || |||||||| | Sbjct 97176 TGAACTGGATGGGGGCGGCAGCAGCCATGGTTCGCAGGTAGTACATACCAGTCTTGAGAC 97117 Query 110391 CTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGA 110450 | | ||||| |||| | ||||| || | ||||||| ||| || || ||| ||| Sbjct 97116 CCTTCTTCCAGCCGTAGAAGTGCATGGAGGTGAGCTTGCCCATGGTGGGG---TCCTTGA 97060 Query 110451 AGAG---GTTCAT--ACTTTGACTTTGGTCAATGAAGCGCCCCCGTTGTGCCGCCATATC 110505 | | ||| | ||| |||| ||||||||||| || || | || ||||| || Sbjct 97059 TGTGAATGTTGAGGGACTGGGACT--GGTCAATGAAGGGCGATCGGTCGGCAGCCATCTC 97002 Query 110506 AATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGG 110565 |||| |||| | ||| ||||| || || || || || | |||||| || | || Sbjct 97001 GATGATTCGCTTCTGCGAAATCTCCCACACGGTTCGGTACAGGTCCTTGATCTCCTGGGG 96942 Query 110566 GATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTT 110625 ||| | | ||| ||||| | ||| || | ||| || | | |||||| || Sbjct 96941 GATGTTGGGGATGTTCTGCACGGATCCGTTGTCGGCCACGATTCGGTTCTTCATGGTCTC 96882 Query 110626 GGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTC 110685 ||| ||||||| || ||||| |||| || ||||||||| ||||| Sbjct 96881 ATTCCACAGACCAACCTCAACCAGGTCCTTGAGCAGCCAGGGGTTGACAATCTGGAACTC 96822 Query 110686 ACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATT 110745 || || || || || ||| ||||| | ||||| || || ||||| || || Sbjct 96821 GCCAGCAAGCACTCGTCGAGAGTAAATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGAA 96762 Query 110746 ACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAG 110805 || | || || | ||||||||| || ||||| || || | || || ||| || | Sbjct 96761 GCCGAGAATCTGAGAGGTGGAGGCGGTGGGCATGGGAGCAACCAGCAGCGAGTTTCGCAT 96702 Query 110806 ACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCT----TGGTTT 110861 ||| ||| | |||| |||| ||| | ||||| || | |||| || | Sbjct 96701 ACCGGTCTTCATGATATTGGCCTTAAGATCGTCCCACTCCCA---AAGCTCGGAGGGAGT 96645 Query 110862 CACCTTCCCACATGTCAAACTGAAG--CACCCCTTGGGACGCGGGAGAACCCTCAAAGGT 110919 ||| || ||||| |||||||||||| | ||||| ||| || ||||| |||| ||||| Sbjct 96644 CACGTT-CCACAGGTCAAACTGAAGGTCTCCCCT--GGAGGCAGGAGAGCCCTGGAAGGT 96588 Query 110920 TTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACAT 110979 || |||| ||| | | ||||| || | ||||| | || | |||| || || Sbjct 96587 CTCGTAGGCACCGTCCTCAAGAGCCATCTCGTAAGAGGCCTCGACGGCTCCGTGGTAGAT 96528 Query 110980 GGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCA 111039 ||| || ||||| | || | || |||||| || | || ||||| | | || ||| Sbjct 96527 GGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCGGCAGACTCAAA-GGGAAGTCGCA 96469 Query 111040 CA-AAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATAT 111098 | || || || || ||||| |||||||||| | ||||||||| |||||||| | Sbjct 96468 GAGCCATGAAGGTGTCGGCCAGACCCTGAACACCCAGAGCAATAGGTCGATGTCGCATGT 96409 Query 111099 TAGACTTTCGCGCAGTCTC---AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGAT 111155 | ||||| | | ||| |||||| || | |||| ||| || | ||| || | Sbjct 96408 TGGACTT---CTTTGCCTCGGGAACGGGGTAGTAGTTTCGGTCGATAATGGCGTTGAGGT 96352 Query 111156 TTTTGGTAACAAT--CTTT-GTGATTTCATGAAGTTTTTCATAATC-----AAAAGTGCG 111207 || ||||| |||| | ||| || || || || | | || | ||| | Sbjct 96351 TT---CGCACAATGACTTTGGCGATATCGTGCAGCTTCTTGAAGTCGTAGAAGGAGTTGG 96295 Query 111208 AGTC-TCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCT 111266 ||| ||| | ||||| | | || ||||| || || |||| |||||||||||| || Sbjct 96294 TGTCGTCTCGAGTGACAAAGGTGGGCAGGGCAATGGAGGCCAGGTTGCAAACAGCCACCT 96235 Query 111267 CATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCA 111326 |||| | | |||||| | ||| || || | ||||||| ||| || || || | Sbjct 96234 CATCGGGAGAAGAGTACTCGACAATCTCGCAGCACAGGTTGGAAGACTTGATGGTTCCGA 96175 Query 111327 AATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCG 111386 ||||| ||||| ||| |||||| |||||||||||||||||| |||| | || | Sbjct 96174 GGTTCTTCTGGTTGGACTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTACCGG 96115 Query 111387 TCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGG--CGT 111443 ||| ||||| | | |||||| | ||| | | || | ||| || |||| ||| Sbjct 96114 ACTCGGTCTGGCAGTCGAGAATGTGGTACCACAGCTTCTG-GGCGGG---GATGGTTCGT 96059 Query 111444 TGGCC-CGTCCCTCCGCCTCGTACTTTGTGTAGAG-GGCTTCAAACTCCTCACCCACCGC 111501 | || || |||||| |||||||| ||| || |||| ||||| || || | Sbjct 96058 CGACCTCGGCCCTCCTTCTCGTACTGCTCGTACAGCTGCTT-GAACTCGTCGCCGTAGAC 96000 Query 111502 GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTC--CTCA 111559 |||| ||||| || || || || || | |||| ||| | | | ||| ||| Sbjct 95999 GTCGTCCAGACCGGGACACTCGTTGGGGCACATGAGAGTCCACT--CGGCGTTCTGCTCG 95942 Query 111560 ACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCC 111619 || |||| |||||| || || || |||||||||| || || |||| ||| | Sbjct 95941 ACTCGCTCCATGAACAGATCGGGGATCCACAGGGCCAGGAACAGGTCTCGGGCTCGAATC 95882 Query 111620 TCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGC 111679 || || | || ||||| ||| | ||| |||||| | ||| || ||||||| ||| Sbjct 95881 TCCTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGATGTCGTCGTGCCAGGGC 95822 Query 111680 TCAAGATAGACTGCGATAGATCC------CTT-TCGACGCCCAGCTTGATTTACATAGCG 111732 ||||| || | || | | ||| ||| | | | ||| || | || || || Sbjct 95821 TCAAGGTACATGGCAAAGGCTCCGGGTCGCTTGTTGCCTCCC----TGGTCCACGTATCG 95766 Query 111733 CGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCC 111792 || ||| ||| | || || ||||| || | ||||| | || || || || || Sbjct 95765 GGCAGTGTTGTTGTAGACACGCAGCATGGGCACGATACCGTTGGAGGTTCCGTTGGTGCC 95706 Query 111793 CCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCA 111852 ||| || |||||| | | |||||| | || ||||| ||||| | Sbjct 95705 GGCAATGTAGGAGCCGGTGGCTCGGATGTTGTGGATGGAGAGACCGATACCGCCAGCAGA 95646 Query 111853 CTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTT 111912 ||| || || | ||||| | | || || | ||||| |||| ||| ||||| ||||| Sbjct 95645 CTTGGAAATCAGAGCACAGGTCTTGAGGGTATCGTAGATGCCGTCGATGGAGTCGTCCTT 95586 Query 111913 GTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGT 111972 || || |||||| || |||||||| || || || ||||| ||| ||||||| Sbjct 95585 CATGTTGACAAGGAAACACGACGACATCTGGGGCTGGGGGGTTCCAGCGTTGTAGAGGGT 95526 Query 111973 TGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAAT 112031 || | ||||| | || ||| | || ||||| | || ||| ||||| | | | Sbjct 95525 GGGGGAAGCGTGGGT-AAAGTACTTCTGAGACATGTAGTTGTAGGTCTCGATGGCTCGGG 95467 Query 112032 CAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 ||||||| || |||||||| |||| | || ||||||| ||| | ||| || Sbjct 95466 CAATGTCGTCACCGTGGATTCCGACGGACACTCGCATGATCATCTGCTGGGG 95415 >seq3 Length=1361780 Score = 129 bits (142), Expect = 7e-25 Identities = 351/531 (66%), Gaps = 20/531 (4%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| ||| |||||||| |||||||||||||| || | || ||||| ||||| Sbjct 15202 TAGTCGGAGACTCGCTTCTCGAAGAAGTTGGTCTTACCGGCCAGAGAGATGTTCTCCATG 15143 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA---TGG-GTGGC--ACCCCAACTTGTTTGAGG 122484 ||||| || || || | | ||| | | ||| || || | |||| || Sbjct 15142 AAGTCGAAGGGGTTGGTGGAGTTGTAGACCTTGGTGTTGCCGAGAGCAACC------AGC 15089 Query 122485 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGG 122544 || || || | ||| |||||||||||| | |||| || | |||||| |||| || Sbjct 15088 AGTCGGTCGGCGACAAACTCAATGTACTGGCACATGAGCTTGGCGTTCATGCCGAGCAGA 15029 Query 122545 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 122604 ||| || || ||||| | |||| | | ||| || |||| ||||| | || | Sbjct 15028 CCACAGGGCAGAGCGTCGGTCAGGAACTCCTGCTCGATGCCAACAGCCTCGACAATGACG 14969 Query 122605 GCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTT-GAAGAGCTCCACGGCAAA 122663 | | || | | | | | ||||| || | | | || ||||||| |||||| Sbjct 14968 TCCTCGACAATCTTCTTGGAGGGTCGGTT-CTCGAGGTGAGAGAAGAGCAGACAGGCAAA 14910 Query 122664 CTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCAT 122723 || ||| |||||||| ||||| ||||| || || || |||||| || || ||||| Sbjct 14909 GTCGGTGTGCAGACCCTCGTCTCGAGAAATGAGCTCGTTGGAGAAGGTGAGGCCGGGCAT 14850 Query 122724 GAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTC 122783 |||||| |||||||| | ||| | || | | ||| || || ||||| ||||||||||| Sbjct 14849 GAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCTGAGAAAAAGATACCCTC 14790 Query 122784 CACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC---AAACCA 122840 || ||||| |||| || || ||| | |||| | |||| | || || ||| Sbjct 14789 GACGGCGGCAAAGGCAATGAGCCGCTCGCCAAAGGTG---GACTCCTCGTCGGAAATCCA 14733 Query 122841 TTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 || | ||||| | |||||||||| || || || | || | |||||| Sbjct 14732 CTTGAGAGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGC 14682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031654582400