Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20deformans_20[genbank_20GCA_5F001600075.1_202016-03-01]
44 sequences; 20,877,144 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq24 244 1e-59
seq3 152 6e-32
seq1 89.7 6e-13
>seq24
Length=170883
Score = 244 bits (270), Expect = 1e-59
Identities = 1146/1793 (64%), Gaps = 55/1793 (3%)
Strand=Plus/Minus
Query 117798 TCAAGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTC 117857
|||| | ||||||| ||||| || ||| | | ||| ||||||||||| || |||
Sbjct 97183 TCAATGGTGAACTGGATGGGGGCGGCAGCAGCCATGGTTCGCAGGTAGTACATACCAGTC 97124
Query 117858 TTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTT 117917
||||| |||| ||||||| | || | ||||| |||| | |||| | ||| ||
Sbjct 97123 TTGAGACCCTTCTTCCAGCCGTAGAAGTGCATGGAGGTGAGCTTGCCCATGGTGGGG--- 97067
Query 117918 TCCATGAAGAG---GTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCC 117974
||| ||| | | ||| | ||||| || || |||||| | || || || |||
Sbjct 97066 TCCTTGATGTGAATGTTGAGGGACTGGGACTGGTCAATGAAGGGCGATCGGTCGGCAGCC 97007
Query 117975 ATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCA 118034
|| || || | |||| | || |||||||| || | ||| |||| ||| || ||
Sbjct 97006 ATCTCGATGATTCGCTTCTGCGAAATCTCCCACACGGTTCGGTACAGGTCCTTGATCTCC 96947
Query 118035 TCTGGGATATCCACGATATTTTGGATGGATCCAC---CCGCCTTGACCATGAGATCCTTC 118091
| ||||| | ||| || || | |||||| | ||| || || | | ||||
Sbjct 96946 TGGGGGATGTTGGGGATGTTCTGCACGGATCCGTTGTCGGCC---ACGATTCGGTTCTTC 96890
Query 118092 ATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACA 118151
|| || ||| ||||||| || || |||| | || |||||||
Sbjct 96889 ATGGTCTCATTCCACAGACCAACCTCAACCAGGTCCTTGAGCAGCCAGGGGTTGACAATC 96830
Query 118152 ACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCA 118210
||||| || || || |||| ||| || || |||| ||||| ||||| |||||
Sbjct 96829 TGGAACTCGCCAGCAAGCACTCGTCG-AGAGTAAATGTTGGAGGTGTAGGGCTCGAAGCA 96771
Query 118211 CTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCT 118270
||| ||| || | || || | |||||||| ||||||||||| || | || ||
Sbjct 96770 CTCGTTGAAGCCGAGAATCTGAGAGGTGGAGGCGGTGGGCATGGGAGCAACCAGCAGCGA 96711
Query 118271 GTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTT 118330
||| || | ||| | | | | || |||| ||| ||||||| || | ||||
Sbjct 96710 GTTTCGCATACCGGTCTTCATGATATTGGCCTTAAGATCGTCCCACTCCCAA---AGCTC 96654
Query 118331 TGTCTC---CCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTC 118387
| | | | ||||| |||||||| ||| || ||| || || || ||||
Sbjct 96653 GGAGGGAGTCACGTTCCACAGGTCAAACTGAAGGTCTCCCCTGGAGGCAGGAGAGCCCTG 96594
Query 118388 AAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTG 118447
|| ||||| || | || || | |||| ||| | ||||||| |||| ||||
Sbjct 96593 GAAGGTCTCGTAGGCACCGTCCTCAAGAGCCATCTCGTAAGAGGCCTCGACGGCTCCGTG 96534
Query 118448 ATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAG 118507
|| || || || || || | || | |||||||||| | || ||||| | ||
Sbjct 96533 GTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCGGCAGACTCAAAGGGAAG 96474
Query 118508 TCGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTC 118566
||| || | || || || || ||||| || ||||| || |||| || |||||||
Sbjct 96473 TCG-CAGAGCCATGAAGGTGTCGGCCAGACCCTGAACACCCAGAGCAATAGGTCGATGTC 96415
Query 118567 TCATATTAGACTTCCGAGCGGTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTAT 118623
||| || |||||| || ||| ||||| || | || | ||||||| |
Sbjct 96414 GCATGTTGGACTTCTTTGC---CTCGGGAACGGGGTAGTAGTTTCGGTCGATAATGGCGT 96358
Query 118624 TTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAA-----ACT 118678
| || ||| | || || | ||| || || ||||| | | | || | | |
Sbjct 96357 TGAGGTTTCGCACAATGACTTTGGCGATATCGTGCAGCTTCTTGAAGTCGTAGAAGGAGT 96298
Query 118679 GCGAGTC-TCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGG 118737
| ||| ||| | ||||| | | || ||||| || || ||||| || || ||||
Sbjct 96297 TGGTGTCGTCTCGAGTGACAAAGGTGGGCAGGGCAATGGAGGCCAGGTTGCAAACAGCCA 96238
Query 118738 TCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGC 118797
|||||| | || |||||| | ||| || ||||| ||| ||| ||| ||||| |
Sbjct 96237 CCTCATCGGGAGAAGAGTACTCGACAATCTCGCAGCACAGGTTGGAAGACTTGATGGTTC 96178
Query 118798 CCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCC 118857
| | |||||| || || |||||| ||| || ||||||||||| |||||| | || | |
Sbjct 96177 CGAGGTTCTTCTGGTTGGACTTTCGGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTAC 96118
Query 118858 CCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCG 118916
| | ||| || ||| | | |||||| | ||| | | || | || || | || ||
Sbjct 96117 CGGACTCGGTCTGGCAGTCGAGAATGTGGTACCACAGCTTCTG-GGCGGGGATGGT-TCG 96060
Query 118917 TTG-GCTCGCCCCTCTTCCTCGTACTTTGTGTAGAG-GGCTTCAAACTCTTCACCCACGG 118974
| | |||| ||||| | |||||||| ||| || |||| ||||| || || |
Sbjct 96059 TCGACCTCGGCCCTCCTTCTCGTACTGCTCGTACAGCTGCTT-GAACTCGTCGCCGTAGA 96001
Query 118975 CCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAA 119034
| || || || || || | ||||| | ||||| ||| | | || ||| |
Sbjct 96000 CGTCGTCCAGACCGGGACACTCGTTGGGGCACATGAGAGTCCACTCGGCGTTCTGCTCGA 95941
Query 119035 CCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTT 119094
| |||| |||||| || || |||||||| || ||| ||| || || || ||| |
Sbjct 95940 CTCGCTCCATGAACAGATCGGGGATCCACAGGGCCAGGAACAGGTCTCGGGCTCGAATCT 95881
Query 119095 CTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTT 119154
| || | || || || |||| ||| | || || | ||| || ||||||| || |
Sbjct 95880 CCTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGATGTCGTCGTGCCAGGGCT 95821
Query 119155 CCAGGTACACCGCGATTGACCC------CTTACGACGACCAGCCTGGTTTACATACCTCG 119208
| ||||||| || | | || ||| | | || |||||| || || | |
Sbjct 95820 CAAGGTACATGGCAAAGGCTCCGGGTCGCTT--GTTG-CCTCCCTGGTCCACGTATCGGG 95764
Query 119209 CAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCC 119268
||||| ||| | ||||| ||||| || | |||||| | ||| || || || ||
Sbjct 95763 CAGTGTTGTTGTAGACACGCAGCATGGGCACGATACCGTTGGAGGTTCCGTTGGTGCCGG 95704
Query 119269 GAA--TACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCA 119326
|| || ||| | |||||| || | ||||||| | ||| ||||| || || |
Sbjct 95703 CAATGTAGGAGCC--GGTGGCTCGGATGTTGTGGATGGAGAGACCGATACCGCCAGCAGA 95646
Query 119327 CTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTT 119386
||| || || | || || | |||| | ||||||| || ||||| ||||| ||||
Sbjct 95645 CTTGGAAATCAGAGCACAGGTCTTGAGGGTATCGTAGATGCCGTCGATGGAGTCGTCCTT 95586
Query 119387 ATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGT 119446
| || ||||| || |||||| || ||| ||| || ||||||||| |||| ||
Sbjct 95585 CATGTTGACAAGGAAACACGACGACATCTGGGGCTGGGGGGTTCCAGCGTTGTAGAGGGT 95526
Query 119447 TGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGG 119505
|| | |||||| | || ||| | || ||||| | || ||||||||| | | | ||
Sbjct 95525 GGGGGAAGCGTGGGT-AAAGTACTTCTGAGACATGTAGTTGTAGGTCTCGATGGCTCGGG 95467
Query 119506 GAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGT 119558
|||||| || ||||| || |||| || || ||||| | ||| | ||||||
Sbjct 95466 CAATGTCGTCACCGTGGATTCCGACGGACACTCGCATGATCATCTGCTGGGGT 95414
>seq3
Length=1361780
Score = 152 bits (168), Expect = 6e-32
Identities = 352/522 (67%), Gaps = 20/522 (4%)
Strand=Plus/Minus
Query 129737 ACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAAT 129796
|| ||||||||||||||||| ||||| ||| ||| ||| |||||||| || || ||
Sbjct 15193 ACTCGCTTCTCGAAGAAGTTGGTCTTACCGGCCAGAGAGATGTTCTCCATGAAGTCGAAG 15134
Query 129797 GGGTTCTTTGAGTTCCAAA--TTGCTG--GC--ACTCCAATCTGTTTGAGGAGACGATCC 129850
||||| | ||||| | | ||| || || | ||| | || || || ||
Sbjct 15133 GGGTTGGTGGAGTTGTAGACCTTGGTGTTGCCGAGAGCAACC------AGCAGTCGGTCG 15080
Query 129851 GAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACATGGG 129910
| ||| |||||||||||| |||| || || |||||| |||| || ||| ||
Sbjct 15079 GCGACAAACTCAATGTACTGGCACATGAGCTTGGCGTTCATGCCGAGCAGACCACAGGGC 15020
Query 129911 AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGAATG 129970
|| ||||| | |||| ||| ||| ||| | ||||| || | || | | | |
Sbjct 15019 AGAGCGTCGGTCAGGAACTCCTGCTCGATGCCAACAGCCTCGACAATGACGTCCTCGACA 14960
Query 129971 GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTT-GAAGAGTTCCACGGCAAACTCCTGGTG 130029
||| | || |||| || | | | || |||||| |||||| || |||
Sbjct 14959 ATCTTCTTGGAGGGTCGGTT-CTCGAGGTGAGAGAAGAGCAGACAGGCAAAGTCGGTGTG 14901
Query 130030 GAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCG 130089
||||||||||| || || ||||| || || |||||| || || ||||||||||| ||
Sbjct 14900 CAGACCCTCGTCTCGAGAAATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGACCTCG 14841
Query 130090 CTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGC 130149
|||||| | |||||| || | || ||||| ||||| ||||| ||||| || ||
Sbjct 14840 CTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCTGAGAAAAAGATACCCTCGACGGCGGC 14781
Query 130150 GAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACT--TTGTATCAAA-CCACTTCATCGC 130206
|| |||| ||| ||||| |||||| ||||| | || ||| |||||| | ||
Sbjct 14780 AAAGGCAATGAGCCGCTCGCCAAAGG---TGGACTCCTCGTCGGAAATCCACTTGAGAGC 14724
Query 130207 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248
||| | ||||| |||| ||| || |||| ||||| ||| ||
Sbjct 14723 CCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGC 14682
>seq1
Length=2434256
Score = 89.7 bits (98), Expect = 6e-13
Identities = 280/428 (65%), Gaps = 8/428 (2%)
Strand=Plus/Plus
Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896
|| || |||||||| || || |||||||| |||||| | | | |||||| | |
Sbjct 1212439 CGTAGATAGTACATGCCTGTTTTGAGCCCGGCCTTCCATCCGTGGAAATGCATCGCTGTG 1212498
Query 117897 AACTTGGAGAGGGTTGGACTTTC---CATGAAGAGGTTCATACTTTGGGATTGATCGATG 117953
| ||| | |||| || | || |||||| | ||| | | || || || || |||
Sbjct 1212499 ATTTTGCCGTGGGT--GA-TATCGGGCATGAAAATGTTGAGAGACTGCGACTGGTCAATG 1212555
Query 117954 AAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTC 118013
|| | | ||| ||||||||||||| || | | |||||| ||||| | |||
Sbjct 1212556 TAGGGAGCTCGAGCCGCCGCCATATCGATAATGTTGCGAGCCTTGATCTCCCAAGCGGTC 1212615
Query 118014 CTGTAGA-GGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGC 118072
|| |||| || || | || | || ||||| | |||| | || || || ||| |
Sbjct 1212616 CTATAGACGGCTC-TGATGTGTTCGGGGATCTGGGTGATACTCTGTATCGAGCCATTGTC 1212674
Query 118073 CTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCAC 118132
| || || | | ||||| |||| | ||| | || | ||| ||||||| | ||
Sbjct 1212675 GTGGATGATTCGGTTTTTCATCTCCTCGGTCCACATGCCCAGCTTGATGAGATCTTTCAT 1212734
Query 118133 GAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGT 118192
|| | |||| || | |||||| || || || || | ||| || || ||||
Sbjct 1212735 CAGCCAATGGTTGATCACCAGAAACTCGCCTGCCTGGACTCGACGCAGGTAAATGTTGGA 1212794
Query 118193 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCAT 118252
|||||| |||||||| ||||| |||| |||| || || | ||||| ||||| |||||
Sbjct 1212795 CGTGTACGGCTCAAAACACTCGTTGTGGCCCAGAATCTGAGAAGTGGACGCTGTAGGCAT 1212854
Query 118253 GGGTGCCA 118260
|| ||||
Sbjct 1212855 AGGAGCCA 1212862
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618434859860640
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